Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq4916 475 4e-129 seq1733 170 2e-37 seq3554 127 3e-24 seq5759 122 1e-22 seq4581 98.7 1e-15 >seq4916 Length=9241 Score = 475 bits (526), Expect = 4e-129 Identities = 1066/1586 (67%), Gaps = 25/1586 (2%) Strand=Plus/Minus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||||| || || ||||| || || || |||||| || || || | ||| Sbjct 4355 TTCATCTTGGTCCTTGTACTTCTCGGCGTCGGCGACCATGCGGTCGATCTCGGACTGCGA 4296 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 | || || ||||| ||||| ||||| ||||| | || |||| | ||| || | Sbjct 4295 CAGTCGACCTTTATCGTTCGTGATCGTGATCTTGTTCTCCTTGCCCGTCGACTTCTCCAC 4236 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 || || |||||||| || || ||||||| |||||| | || | ||| || || Sbjct 4235 GGCCGAGACGTTCAAAATGCCGTTGACATCAACGTCGAACGTCACGTCAATCTGAGGCAC 4176 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 ||| | ||| || || ||||| | | || | || || | | |||||| Sbjct 4175 ACCGCGCGGCATGGGCGGGATACCGTCCAGGTTGAACTTGCCCAGAAGATGGTTATCACG 4116 Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGC 6867 || | | | ||||| || || | |||| || ||| | || || ||||| ||| Sbjct 4115 CGTCATGGTTCGTTCGCCCTCGAACACTTGGATCAGCACGCCCGGCTGGTTATCA-GTGT 4057 Query 6868 -CGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGG 6926 ||| ||||| | || ||||| | || | ||| || || | ||||| | | || Sbjct 4056 ACGTCGAGAACGTCTGCGTCTTCTTCGCAGGCACCGTAGTGTTGCGTGGAATGAGCTTGG 3997 Query 6927 TCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACA 6986 |||||| ||||| || || | || | ||||| |||| ||||||| |||| || Sbjct 3996 TCATAACTCCACCGGCCGTCTCCAAACCCAACGACAGCGGTGCGACGTCCAGCAGTAGCA 3937 Query 6987 GGTCTTGAACAGATT---CGTTCCCT--TCACCCGTTAAGATGGCGGCTTGGACCGTCGC 7041 ||||||| ||| || || | || | || | | || || || || ||||| || Sbjct 3936 GGTCTTG--CAGCTTGGACGATGACTCATTGCCACTCAGTATCGCCGCCTGCACCGTGGC 3879 Query 7042 CCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATA 7101 ||||| ||||| || || || ||||| |||| || ||| || || ||||| || | Sbjct 3878 GCCGTACGCGACGGCTTCGTCCGGGTTGATCGACTTGAACAGATCCTTGCCGTTGAAGAA 3819 Query 7102 ATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTC 7161 | || | || ||| || | |||||||| || || ||||| ||||||| ||||| || Sbjct 3818 ACCCATCAGCAATTGCTGCACCTTCGGGATGCGCGTAGATCCGCCGACCAGGACGATCTC 3759 Query 7162 ATTCACTTTCGATTTATCGAT--CTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 | ||| | | || | || ||||||||| || | | |||| || ||||| Sbjct 3758 GTCCACCT--GGTTCTTGGACAGCTTTGAGTCACGCAAAACCTGCGCGACCGGCTCCATC 3701 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 || ||||| |||| ||||| ||||| |||||||| || || |||| | | | Sbjct 3700 GTCTTGCGGAAGTAGTCGGCGCACAGGTCCTCGAAACGTGCGCGCGTGATGGTCGAGTTG 3641 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 ||||| | || || || ||| ||||| |||| | | || |||| | ||| ||| Sbjct 3640 AAATCGATACCATCCAGTAGCGAGTCAATCTCAAGGTACGCCTGCGCCGAAGTAGACAAC 3581 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| ||||| || |||||||| || | ||||| || |||||| |||| | | Sbjct 3580 GTCCGCTTGGCGCGTTCGCACGCCGTACGCAGGCGACGCAGCGCACGCTGGTTCACTGTC 3521 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 ||||| || | ||| || || || || | ||| | | | || | ||| Sbjct 3520 ATATCCTTGCGGTATTTGCGCTTGAATTCCTGTACGAAATATTCGACCAGACGGTTGTCG 3461 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || || ||||| |||||||| || || ||||| ||||| ||||| || ||||| ||| || Sbjct 3460 AAGTCCTCACCTCCCAAGTGCGTGTCACCCGCTGTCGCCTTGACCTCGAAGATGCCTTCT 3401 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 ||||| | | || || ||||| ||||| || || || || || || || || ||||| Sbjct 3400 TCAATAGTGAGCAGAGAGACATCGAACGTTCCGCCGCCGAGATCGAAGATCAGCACGTTG 3341 Query 7580 GTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTA 7639 || | |||| ||| || || || || ||||| || || ||||| || || || Sbjct 3340 TGCTCACCTCCTTT---CTTGTCCAGCCCATAGGCGATCGCAGCGGCCGTCGGCTCGTTG 3284 Query 7640 ATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTG 7698 || ||||| || ||| |||| |||||||||| | |||||||||| |||||||| || || Sbjct 3283 ATGATACGCAGCACA-TTCAAACCAGCAATAGCTCCCGCATCTTTAGTCGCTTGGCGCTG 3225 Query 7699 CGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATA 7758 ||| ||||| ||||||||||||||||| || ||||||| | | || | || || | | Sbjct 3224 CGAGTCGTTGAAGTAGGCCGGGACCGTCACCACCGCGTTCTTCACATGTTTGCCAATGAA 3165 Query 7759 CGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAA 7818 | || || | ||| ||| ||| | | ||||| || |||||||| || | || Sbjct 3164 TGCCTCGGCCACCTCTCGCATCTTGATCAACACCATAGACGAAATCTCCTCCGGTTGGAA 3105 Query 7819 CTGTTTCGTTTCACCGTTAAAAT-CAACTTCAATCATG-GGTTTATCCGCAGCACCGGGG 7876 | |||| || || || || | || | || | || ||||| | | ||||||| | Sbjct 3104 CGTCTTCGACTCGCCCTTGAACTGCACCACCAGT--TGAGGTTTGTTCTCAGCACCACGA 3047 Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936 | ||||| ||| ||| | || || || || || | | | || | ||||| | Sbjct 3046 ACTACCTTGAACGGCCAGTGCTTGATGTCCGACTGCACTTCTGGATCGGTGAACTTGCGC 2987 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 ||||| | ||||| ||||||| || ||||| | | |||||| || |||||||| Sbjct 2986 CCGATCAACCGCTTGACATCAAACACCGTGTTGTGTGCGTTCATAGCCACCTGGTTCTTG 2927 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || || || ||||||||||| || | || || ||||| |||||||| |||||||| Sbjct 2926 GCAGCATCGCCGATAAGACGCTC---CGTGTCGGTGAACGCCACGTACGACGGGGTCGTG 2870 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCAC 8116 || || || |||||||| || || || || ||||||||||| ||||| |||||||||||| Sbjct 2869 CGGTTGCCCTGGTCGTTGGCGATGATCTCCACGCGGTCGTTCTGCCACACGCCGACGCAC 2810 Query 8117 GAATACGTTGTTCCTAAATCAATACC 8142 || || || || || | |||||| || Sbjct 2809 GAGTAGGTCGTGCCCAGATCAATGCC 2784 >seq1733 Length=4195 Score = 170 bits (188), Expect = 2e-37 Identities = 259/368 (70%), Gaps = 3/368 (1%) Strand=Plus/Minus Query 7777 CATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTT 7836 ||| ||| | || ||||| || || |||||||| | | ||| || | ||||| || Sbjct 4163 CATCTTGATCAGCACCATAGACGAGATCTCTTCGGGCTGGAACGTCTTGCTCTCACCCTT 4104 Query 7837 AAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATC 7896 || | || ||| || || || | ||||| | | | ||| ||| ||| | Sbjct 4103 GAACTGCACCGTGATCTGCGGCTTGTCACCGGCACCCGACGTGATCTTGAACGGCCAGTG 4044 Query 7897 TTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATC 7956 || || ||| | || || | ||||||| ||||| | ||||| |||||||| || || Sbjct 4043 CTTGATGTCGGCCTGCACGATTGGGTCCGAGAACTTGCGGCCGATCAGACGCTTGGCGTC 3984 Query 7957 AAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACG 8016 || || ||||| | | ||||||||| |||||||| || || || ||||| ||||| Sbjct 3983 GAACACCGTGTTGTGCGCGTTCATGGCAACCTGGTTCTTGGCGGCATCACCGATCAGACG 3924 Query 8017 TTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGC 8076 || | | |||| || ||||||||||| ||||| || || || || |||||||| || Sbjct 3923 CTCGGTGT---CCGTGAAGGCGACGTACGACGGGGTGGTACGGTTACCCTGGTCGTTGGC 3867 Query 8077 AATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATC 8136 || || || ||||||||||| ||||| |||||||||||||| || || || || | || Sbjct 3866 GATGATCTCCACGCGGTCGTTCTGCCACACGCCGACGCACGAGTAGGTCGTGCCAAGGTC 3807 Query 8137 AATACCGA 8144 ||| |||| Sbjct 3806 AATGCCGA 3799 >seq3554 Length=20457 Score = 127 bits (140), Expect = 3e-24 Identities = 453/701 (65%), Gaps = 18/701 (3%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||||||||| || || || | |||| ||||| || ||||| || Sbjct 5487 TCGAAGTCCTCACCACCCAAGTGAGTGTCACCGCCCGTCGACTTGACCTCGAAGATGCCG 5428 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||| | | ||| ||||| || ||||| ||||||||||| || || || ||| Sbjct 5427 TTCTCAATAGACAGGATCGACACATCGAAGGTACCGCCACCCAGGTCGAAGATCAGCACG 5368 Query 7577 TT------CGTATCGTC---GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCC 7627 || | | |||| | | |||| | || |||||||| || | ||| || ||| Sbjct 5367 TTGCAGGCCTTGCCGTCCGTGCCGGCGTTCGTGTCCAGACCGTAGGCCAGAGCAGCGGCC 5308 Query 7628 GTTGGTTCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGT 7686 || || || || || ||||| ||| || ||||||||| || | | || || || || Sbjct 5307 GTGGGCTCGTTGATGATACGCTTGAC-GTCCAGGCCAGCGATGGAACCGGCGTCCTTGGT 5249 Query 7687 CGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTT 7746 | || || ||| ||||| |||||||| || || || || || || | || || | Sbjct 5248 GGACTGACGCTGCTGGTCGTTGAAGTAGGCGGGCACAGTCACCACGGCCTGCGAGATGCT 5189 Query 7747 CTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTC 7806 || || || | | || || | || ||||| ||| ||||| || || ||||| Sbjct 5188 CTGGCCCAGGAAGGCCTCGGCCGTCTCCTTCATGCGCAGAAGCACCATGGACGAGATCTC 5129 Query 7807 TTCAGCCG-CAAACTGTTTCGTT-TCACCGTTAAAATCAACTTCAATCATGGGTTTATCC 7864 || | || || || || ||| || || || || || || || |||| || || Sbjct 5128 CTCGGGCGTGAAGCTCTT--GTTCTCGCCCTTGAACTCCACCTCGATCAGCACCTTGTCG 5071 Query 7865 GCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCC 7924 || | || | | ||| | | | | | || | | |||| | ||| Sbjct 5070 TCATCGCCCTCCTTGATCTTGAAGGGGAAGTGCGTGGCGTCCTTCTTGACCACCTCGTCG 5011 Query 7925 GAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCT 7984 || | | || || | |||||| || || || || ||||| ||| ||| ||| Sbjct 5010 CTGAAGCTGCGGCCAATGATACGCTTGGCGTCGAACACCGTGTTGGTGGCGTTACCGGCG 4951 Query 7985 GTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTAC 8044 | ||| |||| || || || ||||| ||||| || | || | || || || || Sbjct 4950 GCCTGGATCTTGGCAGCCTCACCGATCAGACGCTC---GCTCTCGTTGAAGGCAACCCAC 4894 Query 8045 GATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAG 8104 || || || || || || |||| | ||| ||||| || || || || ||| | ||| Sbjct 4893 GACGGAGTGGTACGGTTACCTTCGCTGTTGGCAATGATCTCCACCTGGCCGTCCTTCCAC 4834 Query 8105 ACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145 ||||| |||||||| ||||| || || | ||| |||||||| Sbjct 4833 ACGCCCACGCACGAGTACGTCGTACCCAGATCGATACCGAT 4793 >seq5759 Length=37972 Score = 122 bits (134), Expect = 1e-22 Identities = 234/343 (68%), Gaps = 8/343 (2%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||| || ||||| || | | || || || ||||| ||||| || || | ||| Sbjct 18770 ATCGAAGTCCTCACCGCCAAGCAGCGTGTCACCGTTGGTCGACTTGACCTCGAACACACC 18829 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 || || | | | ||| ||||| || ||||| ||||||||||| || | | Sbjct 18830 GCCCGAGATCTCCAGGATCGACACATCGAAGGTACCGCCACCCAGGTCGAACACAGCAAT 18889 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 | | || ||||| | |||| | || ||||| || | ||| || ||||| || || Sbjct 18890 GACCTTACCGTCGGCCTTGTCCATA------CCGTAGGCCAGAGCAGCAGCCGTAGGCTC 18943 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || |||||||| || || ||| || ||||| | | || || || || || || || Sbjct 18944 GTTGATAATACGGAGCACGTCCAGACCGGCAATCTTACCGGCGTCCTTGGTAGCCTGACG 19003 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA- 7754 ||||| ||||| ||||||||||||||||| ||||| || | || || ||| |||| Sbjct 19004 CTGCGAGTCGTTGAAGTAGGCCGGGACCGTCACGACGGCCTGGGTCACAGGCTTGCCGAG 19063 Query 7755 GATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGA 7797 || || | || ||| | || ||||| || || || ||||| || Sbjct 19064 GAAACCA-TCGGCGGTCTCCTTCATCTTAGTCAGCACCATGGA 19105 >seq4581 Length=10530 Score = 98.7 bits (108), Expect = 1e-15 Identities = 348/538 (65%), Gaps = 7/538 (1%) Strand=Plus/Minus Query 105463 TCGTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTA-CACGTCTGAAAGACCCTTTGC 105521 ||||| || || || ||| |||||||||| | || | ||| || | ||||| || Sbjct 4547 TCGTACTTTTCATACAGAGCTTCAAACTCATCGCCCCAGCAC-TCGTACAGACCAGGAGC 4489 Query 105522 CTGATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATC 105581 | | ||||| ||||| ||| || |||| || || || | |||||||| | ||| Sbjct 4488 TTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATC 4429 Query 105582 TGGAATCCACATGGCTGAAAAGAGGTCTCGA-CACCTCGCCTCTTCATCACCTTGATTCA 105640 || | ||||| || |||| | ||| || | | || || ||| ||| || ||| Sbjct 4428 AGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCT-CATTACCGTGGTTCT 4370 Query 105641 AACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAG 105700 ||| | || || || |||| | ||||||||||| || || || |||| || | | Sbjct 4369 TACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACG 4310 Query 105701 ACCCTTTACG---ACGCCCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTA 105757 | || || || || || | || | ||||| | || || |||| |||| || | Sbjct 4309 AGCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCA 4250 Query 105758 ACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCAC 105817 |||| || ||||| || | || | || || || || || || | ||| | || | Sbjct 4249 ACATGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGC 4190 Query 105818 GTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTT 105877 | | | ||| | | || ||||| || ||||| ||| ||||| || || | | Sbjct 4189 GGATGTTGTGCATACTGATACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGCT 4130 Query 105878 TTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATG 105937 ||| || |||||||| || || ||| || |||| | || | |||||||| || | Sbjct 4129 TTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAACAAGAAG 4070 Query 105938 ACATTTGTGGTCTGGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAACAA 105995 ||| || || | || || || || ||||| ||||| || || || || |||| || Sbjct 4069 ACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAA 4012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635081282790760