Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq4581 260 2e-64 seq4510 111 2e-19 seq1640 100 4e-16 seq2791 98.7 1e-15 seq6011 96.9 4e-15 >seq4581 Length=10530 Score = 260 bits (288), Expect = 2e-64 Identities = 1081/1676 (64%), Gaps = 42/1676 (3%) Strand=Plus/Plus Query 111673 TGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 ||||||| ||||| ||||| | | || | |||| ||||| || || || |||||| Sbjct 3983 TGGAGACGTACGAGCTCATGTCGCAGAAGT-TCTTCACGCACGCCACCCCTACTCTCTTC 4041 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||| || || ||| | || || |||| ||||||||| | || | |||| || Sbjct 4042 AACGCCGGCACGCCACGTCCTCAGTTGTCTTCTTGTTTCCTATTGGCTATGCAGGATGAC 4101 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || || | |||||||||| ||| || | |||| ||| ||||| || ||||| || Sbjct 4102 TCTATTGAGGGCATTTACGACACCCTAAAGCAATGCGCCTGTATCTCTAAATGGGCGGGC 4161 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911 |||||||| || || || | || | |||| || || | || || || Sbjct 4162 GGTATCGGTATCAGTATGCACAACATCCGCGCCACTAACAGCTACATCCGCGGCACGAAC 4221 Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971 || || | || ||||| || ||| | || || ||||||| ||| || |||||||| Sbjct 4222 GGCTCCTCTAACGGCATTATCCCCATGTTGCGTGTGTTTAACGACACGGCTCGCTATGTG 4281 Query 111972 AACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCG 112028 |||| | || || |||||||| || |||| |||| | ||||| |||||||| Sbjct 4282 GACCAGGGCGGAGGTAAGCGCAAGGGCTCGTTCGCTATCTACTTGGAGCCGTGGCACGCC 4341 Query 112029 GATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGC 112088 || | | |||||||| || ||||| ||||| ||| ||||| | || |||| Sbjct 4342 GACGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACGGTAATGAGCTGCACCGCGCCCGC 4401 Query 112089 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 112148 || | || | ||| || ||| | || |||||||||||||||||||| |||| | |||| Sbjct 4402 GACTTGTTTTACGCGCTGTGGGTGCCTGATCTCTTCATGAAGAGAGTGGAGGCCAATGGC 4461 Query 112149 AATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGTGAGGA 112207 || ||| | | || ||||| || | || || ||||| | ||| ||| | ||| || || Sbjct 4462 AAGTGGAGTTTGTTCTGTCCCAACGAAGCTCCTGGTCTGTACGAGTGCTG-GGGCGATGA 4520 Query 112208 GTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCAGC 112267 ||||||||| || || |||||||||| | ||| | || ||| | ||| | || Sbjct 4521 GTTTGAAGCTCTGTATGAAAAGTACGAGAAGGAAGGACGTGCGCGTAAGACAATCAACGC 4580 Query 112268 TGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCT 112327 | | ||||| ||||| || | |||| | ||||| || || | ||||| Sbjct 4581 TCAGCAGCTGTGGTTCGCTATCCTAGACGCTCAGATTGAGACGGGAGTGCCCTTCATGCT 4640 Query 112328 TTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTC 112387 ||||| ||||| ||||| ||| ||||| |||| |||||| |||| |||| Sbjct 4641 CTACAAGGACGCAGCTAACCGCAAGTCGAATCAGCAGAACTTGGGTACGATC---CGTTC 4697 Query 112388 ---CAACCTCTGTACAGAAATCTTGGAATTTACAGACA-AAGATGAGACGGCTGTGTGTA 112443 |||| | || ||| || |||| | || | || |||||| ||| ||||| | Sbjct 4698 CAGCAACTTATGCTGCGAAGTCATGGAGTACAC-GTCACCCGATGAGGTGGCAGTGTGCA 4756 Query 112444 ACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATG 112503 || | || || | || || || | || |||||| | || | || || || Sbjct 4757 ACTTGGCGTCTGTGGCGCTGCCTATGTTTGTGGA-----AAACGGTG-TGTTCGACTACA 4810 Query 112504 AAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAA 112563 | | ||| | || || || |||| ||||| |||| || || || | Sbjct 4811 AGAGACTGTATGAGGTGGTCAAGGTGATCACGCGCAACCTCAACAAGGTCATCGACGTCA 4870 Query 112564 ATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTC 112622 | | ||| || |||| ||| ||||| || || || ||| | || ||||| |||||| | Sbjct 4871 ACTATTATCCTGTTGCAGA-GGCTCGCAAGTCCAACATGCGCCATCGTCCCATTGGTATT 4929 Query 112623 GGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAA 112682 || ||||| ||||| ||||||| ||||| || | |||| || || | || Sbjct 4930 GGCGTCCAGGGTCTGGCGGATGCGTTCATCCTCATGAACTACGCGTTCGAGAGCCCGCAA 4989 Query 112683 GCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGT 112742 || ||| | || | || || ||||| || || || || | ||| || Sbjct 4990 GCTCGTGAATTGAACAAGAACATCTTCGAGACGATCTACTTTGCTGCCATGGAGACGTCG 5049 Query 112743 TCGGAG-TTGGCA-GAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA- 112799 |||| ||| || | ||| ||||| || || || || |||| ||||| || || Sbjct 5050 ATGGAGATTGCCACGGAATTG--GGTCCTTACGAGACGTTCCAGGGCTCTCCGGC--CAG 5105 Query 112800 CAAGGGGTGCTT-CAATTTGATATGTGGGAAGGTGAGACC--AAGCTTCACTACG--ACT 112854 ||||| ||| || || || ||||||| || | ||| | || || | ||| Sbjct 5106 TAAGGGTATCTTCCAGTTCGACATGTGGG-GCGTCACACCTTCATCTGGGCTTTGGAACT 5164 Query 112855 GGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCAC 112914 ||| ||| || || || | ||| | | ||||| |||||| || || | |||| Sbjct 5165 GGGCCGCACTAAAAGATGACGTCATTAAACACGGTCTCCGTAACTCGCTGCTGGTTGCAC 5224 Query 112915 CAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACA 112974 | ||||| ||||||||||| || || ||| |||| || || || | | || || |||| Sbjct 5225 CCATGCCGACAGCCTCCACGGCTCAGATCCTGGGCAACAACGAGTCTATCGAGCCTTACA 5284 Query 112975 CGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATC 113034 || | ||||| || | | | || || ||||| |||||| |||||| ||| Sbjct 5285 CGTCCAACATGTACAACCGTCGTGTGTTGGCTGGTGAGTTCACGATTGTTAACAAGTATC 5344 Query 113035 TCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGA--TATGAAGGATCTCATGGT 113092 | || | || || | ||| | || | ||| | ||| || | | ||| || | Sbjct 5345 TGATGAAGGAGCTTATCGAGCTCGGCATTTGGACGCCGGAAGTACGTA--ATCAGATTCT 5402 Query 113093 GAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGTA 113152 ||| | ||||| || | || || | ||| ||||| ||||| ||||| || ||| Sbjct 5403 GAATGATGGTGGCTCGGTGCAGAAGGTCAAGGACATTCCGGATGATGTTAAGGAGAAGTA 5462 Query 113153 CCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCG 113212 | || || ||||| |||||| ||||| ||| | ||| || | || || ||||| || Sbjct 5463 CAAGACGGTGTGGGAGATCAAGCAGAAGGCTGTTCTGGACCTGTCGGCTGACCGTGG-CG 5521 Query 113213 CTT-CATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGC 113271 ||| || || ||||| |||| | ||| | || || || |||| Sbjct 5522 CTTATATCTGCCAGAGTCAGTCGTTGAACATCCACATCGCCGACCCGACTATCAGTAAGC 5581 Query 113272 TCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTAC 113327 | | || |||||| | ||| |||||||||||| ||||| || || ||||| ||| Sbjct 5582 TGACGTCCATGCACTTTTACGCTTGGAAGAAGGGACTCAAGACCGGCATGTACTAC 5637 >seq4510 Length=93785 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 ||||| || | || || || ||| || || ||||||||||| || || |||||| | Sbjct 47906 GAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGGCATCTTCTTCTCGGGCTCTTTCTGCTCC 47965 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 || | |||||| |||||||| || |||||||| ||||| ||||||| |||||||| ||| Sbjct 47966 ATCTTTTGGCTAAAGAAGCGCGGCCTCATGCCCGGTCTGAGCTTCTCGAACGAGCTCATC 48025 Query 102300 TCTCGTGACGAGGG 102313 |||||||||||| Sbjct 48026 AGTCGTGACGAGGG 48039 >seq1640 Length=29134 Score = 100 bits (110), Expect = 4e-16 Identities = 137/188 (73%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAG--CGACTTCAAAGA 16122 || ||||||||||| ||||||| |||||| ||| | || ||| | ||||| | |||| Sbjct 23166 GCGTCAATCTCATCGATGAAGATGATGCACGGT-GCCTTCCGCTTGGCCGACT-CGAAGA 23223 Query 16123 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 16182 | || || || || |||||||||||| || ||||||| | || | || | ||| Sbjct 23224 GGTCACGCACGCGACGGGCGCCCACACCTACGTACATCTCTTCGAACTCTGATCCAGAAG 23283 Query 16183 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 16242 | | || ||| ||||| || ||||| || || || || ||||| || |||||||||| Sbjct 23284 AATAGAAGAACGGGACGCCAGCCTCACCAGCGATAGCACGAGCGAGTAGCGTCTTACCCG 23343 Query 16243 TACCTGGC 16250 |||| ||| Sbjct 23344 TACCAGGC 23351 >seq2791 Length=80716 Score = 98.7 bits (108), Expect = 1e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 176876 AGCTGTGTGACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCG 176935 ||||||| ||| | ||||||||| ||||| | || ||||| ||||||||||||||| Sbjct 15545 AGCTGTGCGACCGTGGCATCACGTACATTTAGAAGTTTACCACGCAGAGGGAAGACACCG 15604 Query 176936 TAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCC 176995 || || ||||| ||||| || | || || || || || || | ||||| ||||||||| Sbjct 15605 TACTGGTCGCGTCCAACGACGGCCAGCCCAGCCACTGCAAGAGCCTTCGCTGAATCACCC 15664 Query 176996 TCTGTCA 177002 || |||| Sbjct 15665 TCCGTCA 15671 >seq6011 Length=24561 Score = 96.9 bits (106), Expect = 4e-15 Identities = 251/376 (67%), Gaps = 10/376 (3%) Strand=Plus/Plus Query 176702 GGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCG 176761 |||||||||| |||||| | |||| | |||||||||||||| ||| |||| ||| Sbjct 14446 GGCCAGAAGTGGTGAATGAGGTTGATCACCAGACCCTTGATGTGACTACCATCGTGATCC 14505 Query 176762 GCATCCGTCATGATCATGAGACGACCATACCG-AAGCTCG-GAAACATCTTGATAGTCCT 176819 ||| | ||||||||| | | ||||| || |||| | | | | || | || | || Sbjct 14506 TGATCTGCCATGATCATCAAGTGGCCATAACGCAAGCCCTTGGTAGA-CTCG-TACTTCT 14563 Query 176820 TACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCT 176879 || | | ||||| | ||||| | || | || ||| | ||| || || Sbjct 14564 GGCCGTACTTGAGACCAAGAATCTTGACCACATTCTGGATCTCGTCGTTCTTCAGGATCT 14623 Query 176880 GTGTGACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGT 176939 ||| | ||| |||||||| || ||| || | | ||||||||||| |||| Sbjct 14624 GTGAGTGGCTGGCTTCACGAACGTTGAGCATCTTACCTCTCAACGGGAAGACACCATAGT 14683 Query 176940 GATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTG 176999 ||| | ||||| |||| |||||| | || || | ||| || || ||||| ||||| | Sbjct 14684 AATCTCTGCCAACAACAGCGAGACCGCCCACGGCAACCGTCTTGGCGGAATCTCCCTCCG 14743 Query 177000 TCACGATGAGTGTACA---CTTGCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCA 177056 | | ||| || || || ||||| | || ||||| || | ||| ||||| |||| Sbjct 14744 TAAGGATCAGAGTGCAGTCCTTGC---TCTTCGCGGTACCAGCGTGGTTGGCATCGTCCA 14800 Query 177057 ATTTGGGAATACCAGT 177072 |||||| |||||||| Sbjct 14801 GTTTGGGGATACCAGT 14816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620692050032080