Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq4581 250 3e-61 seq2381 147 3e-30 seq1640 123 3e-23 seq4510 102 1e-16 seq6011 87.8 2e-12 >seq4581 Length=10530 Score = 250 bits (276), Expect = 3e-61 Identities = 1085/1691 (64%), Gaps = 54/1691 (3%) Strand=Plus/Minus Query 109414 TAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTG 109473 || ||||| || || ||||| || |||||| ||||| | ||||| || | || || Sbjct 5636 TAGTACATGCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGTCAGCTTA 5577 Query 109474 GAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATG-AATCGACC 109532 | ||||| | || | ||||| ||||||| ||| ||| || || || Sbjct 5576 CTGATAGTCGGGTCGGCGATGTGGATGTTCAACGACTGACTCTGGCAGATATAAGCG-CC 5518 Query 109533 ACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAA 109592 ||| ||||||| || ||| | | | ||| || | || ||||| || ||||||||| Sbjct 5517 ACGGTCAGCCGACAGGTCCAGAACAGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTT 5458 Query 109593 ATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTCACCAT 109652 | ||| | |||||| ||||||||| || || || | ||||||||| | |||| || Sbjct 5457 CTCCTTAACATCATCCGGAATGTCCTTGACCTTCTGCACCGAGCCACCATCATTCAGAAT 5398 Query 109653 GAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTT 109712 ||| | || || ||| | |||| || | || || | | |||| ||| Sbjct 5397 CTGATTACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATCAGATACTT 5338 Query 109713 GTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGG 109772 ||| || | || |||||||| | || ||| ||| ||||| | |||||| || Sbjct 5337 GTTAACAATCGTGAACTCACCAGCCAACACACGACGGTTGTACATGTTGGACGTGTAAGG 5278 Query 109773 TTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCAT 109832 |||| | |||| |||||||| ||||| || || ||||| ||||| |||||||| || | Sbjct 5277 CTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATGGGTGCAAC 5218 Query 109833 GAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATA 109892 || || ||| |||||||| | | | || || | |||| |||| | | Sbjct 5217 CAGCAGCGAGTTACGGAGACCGTGTTTAATGACGTCATCTTTTAGTGCGGCCCAGTTCCA 5158 Query 109893 ACGACCACTAAATTTAG-TCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAG 109951 | | ||| || || | | || ||||||| || || | | ||||| | | Sbjct 5157 AAGCCCAG---ATGAAGGTGTGACGC-CCCACATGTCGAACTGGAAGATACCCTTACTGG 5102 Query 109952 CAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCT 110011 | ||||| |||| ||| ||||||| | ||| || ||| | ||| || | || Sbjct 5101 CCGGAGAGCCCTGGAACGTCTCGTAAGGACCCAATTCCGTGGCAATCTCCATCGACGTCT 5042 Query 110012 CTAGTGCCGCATGATACATAGTCTCAAAAATAT----GAGCA-TTCATGAG---GCGAGA 110063 | | || ||| || || ||||| || || | | || |||| ||| ||| | Sbjct 5041 CCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCTTGCGGG- 4983 Query 110064 CTCTTCACAGTCGAAGG-GAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAACAC 110122 |||| |||| | | || || | || | ||| ||||||| |||||||| || | Sbjct 4982 CTCT-------CGAACGCGTAGTTCATGAGGA-TGAACGCATCCGCCAGACCCTGGACGC 4931 Query 110123 CGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGT 110182 | | ||||||||| ||||| |||||| || ||||| | | || || ||| ||| Sbjct 4930 CAATACCAATGGGACGATGGCGCATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAGT 4871 Query 110183 TGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGT 110242 || |||||||||| ||||| || ||| | ||| | |||| ||| | | Sbjct 4870 TGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTGACCACCTCATACAGTCTCT 4811 Query 110243 CGTAATCGAACGTTTTCGTCTCCTTATTG-ACATATTTGGGGAGAGCAATAGACGCAAGA 110301 ||| |||||| | || | || ||| | | || || || | |||||| | Sbjct 4810 TGTAGTCGAACA-------CACCGTTTTCCACAAACATAGGCAGCGCCACAGACGCCAAG 4758 Query 110302 TTGCACACAGAAGTCTCGTCTT-TGTCGGTGTATTCCAAAATTTCCGTACACAAGTTG-- 110358 |||||||| | ||| || || || |||| |||| | ||| || |||||| Sbjct 4757 TTGCACACTGCCACCTCATCGGGTGACG-TGTACTCCATGACTTCGCAGCATAAGTTGCT 4699 Query 110359 -GAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATA 110417 |||| | | ||||||||||| ||||||||| ||| ||| ||| ||||| || Sbjct 4698 GGAACGGATCGT---ACCCAAGTTCTGCTGATTCGACTTGCGGTTAGCTGCGTCCTTGTA 4642 Query 110418 GAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGC 110477 ||||||| | || || || || |||| | | || || || ||| || | || Sbjct 4641 GAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACCA--CAGCTGC 4584 Query 110478 GGCGGGGACAGTTGCGTTA---GCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTC 110534 | | | | ||| ||| || | ||||||| ||||||||| |||| | || Sbjct 4583 TGAGCGTTGA-TTGTCTTACGCGCACGTCCTTCCTTCTCGTACTTTTCATACAGAGCTTC 4525 Query 110535 AAATTCCTGTCCGTA-CACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACC 110593 ||| || | || | ||| || | ||||| || | || ||||||||| | || Sbjct 4524 AAACTCATCGCCCCAGCAC-TCGTACAGACCAGGAGCTTCGTTGGGACAGAACAAACTCC 4466 Query 110594 AATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAA 110653 | || ||| |||| || ||||||||||| || ||||| | ||||| ||| | || | Sbjct 4465 ACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCGTAAAACA 4406 Query 110654 GGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGA 110713 ||| ||| || | |||| ||| ||||| || || |||| || || | | Sbjct 4405 AGTCGCGGGCGCGGTGCAGCTCATTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACA 4346 Query 110714 TATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCT 110770 || | |||||| || || | |||| ||||| || ||||| || || || ||| Sbjct 4345 CGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCTCCGCCCT 4286 Query 110771 GGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATT 110830 ||| |||||||| || ||| | || || || | | ||| || ||||| || | || Sbjct 4285 GGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGGGATAATGCCGTTAGAGG 4226 Query 110831 GACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAA 110890 || || || || | || | ||| |||| || |||| ||| ||| ||||| | Sbjct 4225 AGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTGATACCGA 4166 Query 110891 TACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAA 110950 |||| |||||||| ||| || || || | | || || | ||||| || |||| Sbjct 4165 TACCGCCCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTGTCGTAAATGCCCTCAA 4106 Query 110951 TCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCG 111010 | || || ||| | || | ||| || |||||||||| ||||||||| ||||| || | Sbjct 4105 TAGAGTCATCCTGCATAGCCAATAGGAAACAAGAAGACAACTGAGGACGTGGCGTGCCGG 4046 Query 111011 CATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCT-TGGGACATCTTGTTGTATGTG 111069 | |||||||| ||||| || || || |||| | || | || ||||| | ||| || Sbjct 4045 CGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGA-ACTTCTGCGACATGAGCTCGTACGTC 3987 Query 111070 TCGAGTGCGGA 111080 || |||||||| Sbjct 3986 TCCAGTGCGGA 3976 >seq2381 Length=22152 Score = 147 bits (162), Expect = 3e-30 Identities = 291/424 (69%), Gaps = 25/424 (6%) Strand=Plus/Minus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| || ||||| ||||| || || || | ||| | || |||||||| | ||||| Sbjct 4053 ATCTGCCGGTCGAATCGACCGGGACGAAGGATAGCCTTGTCTAGAATATCAGCTCGGTTC 3994 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAGA 11613 ||| | || | || |||| || |||| | || ||| || ||||| || || Sbjct 3993 GTACCAGCGAGCACCACAACACC---CTCACTCGAGTTGAAGCCATCCATCTCGACCAGC 3937 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTG------GAGGGCATACCACCTGC--CG 11665 |||||||| | || | ||||||||||||||| ||| | || ||| || Sbjct 3936 AGCTGGTTCAGAGTATTCTCACGCTCATCGTTGCCACCCGAGAAGTTTCCTT-TGCTTCG 3878 Query 11666 A--ACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGC 11723 | |||| | ||||| ||||||||||||||||| ||||| ||||| ||||| Sbjct 3877 AGCACGCGCC------ACAGCATCAATCTCATCGATGAACACGATGCACGGAGCATTGGC 3824 Query 11724 ACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAAC 11783 ||| |||| | ||| || ||||| ||||| || || ||||| |||||||| |||| Sbjct 3823 ACGAGCCTCCTTGAACAGGTCACGCACACGAGACGGACCCACACCGACGAACATTTCAAT 3764 Query 11784 GAAGTTTGCGGCAG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAG 11842 ||| | | | | | || ||||| ||| || || | | ||||||||| |||| || Sbjct 3763 GAAATCCGAGCCGGAAATGCTGAA-GAACGGGACGCTGGCCTCACCAGCTGTGGCCTTAG 3705 Query 11843 CGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGG 11902 | | || |||||||||||||| |||| || | || || || || ||||||||||| Sbjct 3704 CCAACAGCGTCTTACCCGTACCGGGTGGGCCGACAAGCAGAGCACCCTTGGGGATCTTGG 3645 Query 11903 CACC 11906 |||| Sbjct 3644 CACC 3641 >seq1640 Length=29134 Score = 123 bits (136), Expect = 3e-23 Identities = 149/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT-TC 11735 |||| ||||||||||||||||||||| | ||| |||||| || | | || | | || Sbjct 23160 CCGATAGCGTCAATCTCATCGATGAAGATGATGCACGGTGCCTTC-CGCTTGGCCGACTC 23218 Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGC 11795 ||| || ||||| || || || || ||||||||| ||||||| |||| | || | Sbjct 23219 GAAGAGGTCACGCACGCGACGGGCGCCCACACCTACGTACATCTCTTCGAACTCTGATCC 23278 Query 11796 AGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTT 11855 |||| | | | ||| || || || |||||||||||| || |||||||| || ||||| Sbjct 23279 AGAAGAATAGAAGAACGGGACGCCAGCCTCACCAGCGATAGCACGAGCGAGTAGCGTCTT 23338 Query 11856 ACCCGTACCAGGTGCACCAG 11875 |||||||||||| | |||| Sbjct 23339 ACCCGTACCAGGCGGGCCAG 23358 >seq4510 Length=93785 Score = 102 bits (112), Expect = 1e-16 Identities = 135/185 (73%), Gaps = 3/185 (2%) Strand=Plus/Minus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 || || || ||| ||||||||| || ||||| || || |||||||| || | ||| Sbjct 48039 CCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCATGAGGCCGCGCTTC 47980 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 |||||||||||||||| || ||| || || ||||||||||| |||||| |||||| Sbjct 47979 TTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCTTCCACAGCAGCGAAA 47920 Query 119634 GCGAATAGACGCTC--AGCAAAAGG-TCGAGACTTGTCGAACCACTTGAGAGCCCAGTTG 119690 || | || ||||| | | ||| | | | |||| |||||||||| ||||||| Sbjct 47919 GCCAGCAGGCGCTCTGGGTAGGAGGATACACGCGGGTCGCACCACTTGAGTGCCCAGTGA 47860 Query 119691 GCCTT 119695 ||||| Sbjct 47859 GCCTT 47855 >seq6011 Length=24561 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/166 (72%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 168429 CTTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGAC 168488 |||||| | | || || || ||||| | |||||| || || || | |||||| | || Sbjct 14655 CTTACCTCTCAACGGGAAGACACCATAGTAATCTCTGCCAACAACAGCGAGACCGCCCAC 14714 Query 168489 AGCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACACTTTCCAGACTGT-- 168546 || | || || || ||||| ||||| || | ||| || || || | || || | Sbjct 14715 GGCAACCGTCTTGGCGGAATCTCCCTCCGTAAGGATCAGAGTGCAGT--CCTTGCTCTTC 14772 Query 168547 GCCGTACCAGCTTTGTTCGCATCGTCCAATTTGGGGATACCAGTGA 168592 || |||||||| | ||| |||||||||| ||||||||||||||||| Sbjct 14773 GCGGTACCAGCGTGGTTGGCATCGTCCAGTTTGGGGATACCAGTGA 14818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588928226684200