Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4581 161 1e-34 seq4510 120 4e-22 seq2791 93.3 5e-14 seq1640 86.0 7e-12 >seq4581 Length=10530 Score = 161 bits (178), Expect = 1e-34 Identities = 672/1041 (65%), Gaps = 37/1041 (4%) Strand=Plus/Minus Query 106278 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 106337 ||||||| ||||| || || || | |||||| || | || ||||| || ||||| || | Sbjct 4951 CATCCGCCAGACCCTGGACGCCAATACCAATGGGACGATGGCGCATGTTGGACTTGCGAG 4892 Query 106338 CAGTCT-CAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATC 106396 | ||| |||| |||||| | || ||| ||||| ||| || || || | | | Sbjct 4891 CC-TCTGCAACAGGATAATAGTTGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACC 4833 Query 106397 TTTGTGATTTCATGAAGTTTTTCATAATCAAA-AGTGCGAGTCTCTTCATTGACATACTT 106455 || | |||| ||| | | || || || | || | ||| ||| || | Sbjct 4832 TTGACCACCTCATACAGTCTCTTGTAGTCGAACACACCG----TTTTCC---ACAAACAT 4780 Query 106456 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 106515 || || || | || ||||| ||||| || ||| |||||| |||||||| | Sbjct 4779 AGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTGTACTCCAT 4720 Query 106516 AATTTCTGTACACAAGTTG---GAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTT 106572 | ||| || |||||| |||| ||||| ||||| |||| || || ||| Sbjct 4719 GACTTCGCAGCATAAGTTGCTGGAACGG---ATCGTACCCAAGTTCTGCTGATTCGACTT 4663 Query 106573 TTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAG 106632 ||| || ||||||||||||||| ||||| |||||||| |||| | | || Sbjct 4662 GCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAG 4603 Query 106633 AATTGCCTTCCACACATCGGCGGCTG---GTACAATGGCGTTGGCCC--GTCCCTCCGCC 106687 || || ||||| || |||| || | || | | || | |||| ||| | Sbjct 4602 GATAGCGAACCACA-----GCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCTTC 4548 Query 106688 TCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGC 106746 ||||||||| || || ||||||||||| || ||| | || ||| | ||||| || || Sbjct 4547 TCGTACTTTTCATACAGAGCTTCAAACTCATCGCCC-CAGCACTCGTACAGACCAGGAGC 4489 Query 106747 CTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTC 106806 | || |||||||| | | ||| | ||| |||| || | ||||||||| || || Sbjct 4488 TTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATC 4429 Query 106807 TGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGA 106865 || | |||||| | |||| | || | | | | || | || | ||| ||||| Sbjct 4428 AGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGC-TCATTACCGTGGTTCT 4370 Query 106866 GTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG 106925 || | || |||||||| | | || |||||||| ||||| | |||| |||| | Sbjct 4369 TACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACG 4310 Query 106926 ATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAA 106982 | ||||| || || || | || | |||||||| || ||| ||||||| || || | Sbjct 4309 AGCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCA 4250 Query 106983 GCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCT 107041 ||| || ||||| || | || || || || || || || || | ||| |||| Sbjct 4249 ACATGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGAT-GTAGCTGTTAGTGGCG 4191 Query 107042 CTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCC 107101 | | | || || || || ||||| || ||||| || ||||| || || | | Sbjct 4190 CGGATGTTGTGCATACTGATACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGC 4131 Query 107102 GTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTG 107161 | || || | || || || | || ||||| |||| | || | ||||| ||| Sbjct 4130 TTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAACAAGAA 4071 Query 107162 GACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATA 107221 |||| ||| || | ||| || || || |||||||| || || || ||||| |||| | | Sbjct 4070 GACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGA-A 4012 Query 107222 CCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCC 107280 | | || ||||| ||||| ||||||| | || | ||||| | ||||||||| Sbjct 4011 CTTCTGCGACATGAGCTCGTACGTCTCCAGTGCGGACTTGATGTCGCTCTTGTGGATGCC 3952 Query 107281 GATGGCCACACGCATAAACAT 107301 | || ||||||| || ||| Sbjct 3951 TAACGCTACACGCAGAATCAT 3931 >seq4510 Length=93785 Score = 120 bits (132), Expect = 4e-22 Identities = 379/575 (66%), Gaps = 12/575 (2%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| || ||||||||||| || | || || | ||||| Sbjct 48345 TACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATCATGTCCATC 48286 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 117105 ||||||| || ||||| |||| | || | ||| |||| | ||| ||||| Sbjct 48285 CAGTCAAAAGGGTTCTTAGCGTGGTAGATCTTGGACACACCAAGCGAGTAGAGCAGACGG 48226 Query 117106 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATT-ACA 117164 || | ||| |||||||||||| | |||| ||||||||||||| || || | ||| Sbjct 48225 TCAGCCACGAACTCAATGTACTGGCACATGAGGGCAGAGTTCATACCAATCAGCTCCACA 48166 Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224 ||||| | ||| | ||| | | ||||||| | || || || | ||| |||| Sbjct 48165 -GGGAGCGAGTCACGCACAAACTCGTGCTCAATCACCACAGCGTCACGAATGATCTCGTG 48107 Query 117225 GATA-GTTTCGGTAGTGGGTCTATTAC--GCAAAGTCTTGAAGAGCTCCACGGCAAACTC 117281 | | | || | | | | | || || | | || || || ||| || || Sbjct 48106 TACACGGCTCTCTGGCAGCTTGGTGACCAGCTTGGAGTACAAAAGG--CA-GGCGAAGTC 48050 Query 117282 CTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAG 117341 | ||| | ||||| || || || || || || ||||||| || || |||||||| Sbjct 48049 CGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCATGAG 47990 Query 117342 ACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 117401 || |||||||| | |||| | || | |||||| || || ||||||||||| || ||||| Sbjct 47989 GCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCTTCCAC 47930 Query 117402 ACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGAC-TTTGTGTCAAACCATTTCA 117460 | || || || | |||||||| | | ||||| || || | ||| |||| || | Sbjct 47929 AGCAGCGAAAGCCAGCAGGCGCTCTGGGTAGGAG-GATACACGCGGGTCGCACCACTTGA 47871 Query 117461 TTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCT 117520 |||||| | ||||||||| | ||| || | || | ||||| | | || | Sbjct 47870 GTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGCAGGAGATGGT 47811 Query 117521 TCTTTTCAGATC-CATCCTTAATGTATTTGTCAAT 117554 ||| || |||| | ||||| ||||| ||||||| Sbjct 47810 CCTTCTC-GATCGCGTCCTTGATGTACGTGTCAAT 47777 >seq2791 Length=80716 Score = 93.3 bits (102), Expect = 5e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 169326 AGCTGTGCCACTGAAGCGTCGCGGACATTCTTACACTTCCCACGGAGAGGAAAGACGCCA 169385 |||||||| || | || || || ||||| | || ||||| ||||| ||||| || Sbjct 15545 AGCTGTGCGACCGTGGCATCACGTACATTTAGAAGTTTACCACGCAGAGGGAAGACACCG 15604 Query 169386 TAGTGATCACGTCCAACGACGGAGAGACCCGCGACCGCAAGGGTTTTCGCTGAATCACCC 169445 || || || ||||||||||||| || || || || ||||| | ||||||||||||||| Sbjct 15605 TACTGGTCGCGTCCAACGACGGCCAGCCCAGCCACTGCAAGAGCCTTCGCTGAATCACCC 15664 Query 169446 TCCGTGACAAT 169456 ||||| | ||| Sbjct 15665 TCCGTCAAAAT 15675 >seq1640 Length=29134 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/188 (71%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGC--GGGCGATTTCAAAGA 9429 || ||||||||||| ||||||| || || ||| | || ||| || ||| | | |||| Sbjct 23166 GCGTCAATCTCATCGATGAAGATGATGCACGGT-GCCTTCCGCTTGGCCGACT-CGAAGA 23223 Query 9430 GATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9489 | || || || | |||||||||||| || ||||||| | || | || | ||| Sbjct 23224 GGTCACGCACGCGACGGGCGCCCACACCTACGTACATCTCTTCGAACTCTGATCCAGAAG 23283 Query 9490 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9549 | | || ||| ||||| || ||||| || || || || ||||| || |||||||||| Sbjct 23284 AATAGAAGAACGGGACGCCAGCCTCACCAGCGATAGCACGAGCGAGTAGCGTCTTACCCG 23343 Query 9550 TACCTGGC 9557 |||| ||| Sbjct 23344 TACCAGGC 23351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589932945182360