Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq4581 237 3e-57 seq4510 208 1e-48 >seq4581 Length=10530 Score = 237 bits (262), Expect = 3e-57 Identities = 714/1087 (66%), Gaps = 44/1087 (4%) Strand=Plus/Minus Query 212909 GTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGG 212968 ||| || ||| ||| ||||| | | ||| | | | ||| | ||| || ||||| || Sbjct 5337 GTTAACAATCGTGAACTCACCAGCCAACACACGACGGTTGTACATGTTGGACGTGTAAGG 5278 Query 212969 CTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCAC 213028 |||||| ||||||||| ||||| ||||| || ||| |||||| |||||||| || || Sbjct 5277 CTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATGGGTGCAAC 5218 Query 213029 CAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGG-CGCCGA--AGCTCTGCCCAGTC 213085 ||| || ||| | | ||||| | |||| | | | || | ||||||| Sbjct 5217 CAGCAGCGAGTTACGGAGACCGTGTTTA---ATGACGTCATCTTTTAGTGCGGCCCAGTT 5161 Query 213086 CCATCTGCCAGAC--AGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCT 213143 ||| ||||| |||| | ||| ||||||||| ||||| ||||| || Sbjct 5160 CCAAAGCCCAGATGAAGGTG--------TGACGCCCCACATGTCGAACTGGAAGATACCC 5109 Query 213144 TTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAG 213203 || || | || ||||||| | | ||| || || ||| |||| | ||| Sbjct 5108 TTACTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCCAATTCCGTGGCAATCTCCATC 5049 Query 213204 GACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG-GC 213262 |||| || || |||||| ||||||| || || || || | | |||| | ||| | || Sbjct 5048 GACGTCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAA-TTCACGAGC 4990 Query 213263 CTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCC 213322 | ||| | ||| | ||||| | |||| |||| ||||| |||||||| || Sbjct 4989 TTGCGGGCTCTCGAACGCGTAGTTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCC 4930 Query 213323 GATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGT 213381 || || ||||| | || | || ||| |||||| |||| ||| | | || ||| ||| Sbjct 4929 AATACCAATGGGACGATGGCGCATGTTGGACTTGCGAGC-CTCTGCAACAGGATAATAGT 4871 Query 213382 TGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACT 213441 || |||||||| ||||||||||||||| ||| ||| ||| || | ||| || Sbjct 4870 TGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTGACCACCTCATACAGTCTCT 4811 Query 213442 CGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGT 213501 || | |||||| |||| | ||||||| |||||| || | |||| || Sbjct 4810 TGTAGTCGAACACA------CCGTTTTCCACAAACATAGGCAGCGCCACAGACGCCAAGT 4757 Query 213502 TGCAAACGGCCACCTCCT-GAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTG 213560 |||| || |||||||| | | | | | ||||||||||||| ||| ||| | ||||||| Sbjct 4756 TGCACACTGCCACCTCATCGGGTGAC-GTGTACTCCATGACTTCGCAGCATAAGTTGCTG 4698 Query 213561 CATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGC 213620 | ||||| || |||| |||||| || || ||||| ||| || | |||||||||||| Sbjct 4697 GAACGGATCGTACCCAAGTTCTGCTGATTCGACTTGCGGTTAGCTGCGTCCTTGTAGAGC 4638 Query 213621 ATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCC 213680 ||| |||| || ||||| | ||| | | || || | ||| || | | || Sbjct 4637 ATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACCACAGCTGCTGAGCG 4578 Query 213681 TTGACCACCCGCCTGACAGCTCCGGGCGTAGC--CTCGTACTGTTCGTAGAGCTCGTTGA 213738 |||| | || || || | | | | | |||||||| ||| || || | | | Sbjct 4577 TTGA----TTGTCTTAC-GCGCACGTCCTTCCTTCTCGTACTTTTCATACAGAGCTTCAA 4523 Query 213739 ATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGC---GGGACACATGAGGCTCC 213795 | || | ||||||| | || ||| || ||| | | | |||||| | | |||| Sbjct 4522 ACTCATCGCCCCAGCACTCGTACAGACCAGGA---GCTTCGTTGGGACAGAACAAACTCC 4466 Query 213796 AGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACA 213855 | | || | | ||||||| |||||| || || || |||||||||||| |||| Sbjct 4465 ACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCGTAAAACA 4406 Query 213856 GGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGA 213915 ||| | || | | || || ||| || |||||||| || || || || | Sbjct 4405 AGTCGCGGGCGCGGTGCAGCTCATTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACA 4346 Query 213916 TGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTT---GCCGCCCT 213972 ||| |||||||||||||||| |||||| || || | |||| | ||| ||||||| Sbjct 4345 CGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCTCCGCCCT 4286 Query 213973 GGTCCAC 213979 ||||||| Sbjct 4285 GGTCCAC 4279 >seq4510 Length=93785 Score = 208 bits (230), Expect = 1e-48 Identities = 485/728 (67%), Gaps = 15/728 (2%) Strand=Plus/Minus Query 47954 AGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 ||||| | || || ||| |||| ||||| | ||||||||| |||||| || || Sbjct 48234 AGCAGACGGTCAGCCACGAACTCAATGTACTGGCACATGAGGGCAGAGTTCATACCAATC 48175 Query 48014 AGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 || ||| || | | | | |||||| | ||| ||| ||| || || | | Sbjct 48174 AGCTCCACAGGGAGCGAGTCACGCACAAACTCGTGCTCAATCACCACAGCGTCACGAATG 48115 Query 48074 ATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 |||| | || ||| ||||| | ||| || ||| ||||| || | | |||| Sbjct 48114 ATCTCGTGTACACGGCTCTCTGGCAGCTTGGTGACCAG---CTTGGAGTACAAAAGGCAG 48058 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 || |||||| |||||| ||| ||||| || ||||||||| |||| ||||||| ||||| Sbjct 48057 GCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGACCG 47998 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||||| || | || || ||||| || || | ||||||||| |||||||||||| Sbjct 47997 GGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATG 47938 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG---CGTTCTTGTCTGAG 48310 || ||||| || ||||| || || | |||| | | || | | | ||| | Sbjct 47937 CCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCTGGGTAGGAGGATACACGCGGGTC---G 47881 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGG 48370 ||| || ||||||| ||||||||| ||| || || || ||||| ||||| || Sbjct 47880 CACCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGC 47821 Query 48371 AAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTAC 48427 | ||| | | ||| |||||| | || || | ||||||| || ||| Sbjct 47820 AGGAGATGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAG---TGAGTAG 47764 Query 48428 ATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAAC 48487 | ||| ||||| | ||||| || ||||||||||| || |||||| | ||||| | Sbjct 47763 ACCTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGGC 47704 Query 48488 ACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCA 48547 ||||||||||| || ||| || || ||||| || || || || || || Sbjct 47703 ACCTGCACTTCGTTGCTGAAGTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTGGCT 47644 Query 48548 GCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAG 48607 || |||||||| || || || || | ||| || |||||||||| ||||| ||||| Sbjct 47643 GCGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTTGCTCCAG 47584 Query 48608 CCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTT 48667 ||| | ||| | | ||||| | || || | ||||||||||| || ||||| Sbjct 47583 TCCTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCTTTC 47524 Query 48668 TTGTACAT 48675 |||||||| Sbjct 47523 TTGTACAT 47516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931457241045760