Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq4581 140 4e-28 seq4510 120 4e-22 >seq4581 Length=10530 Score = 140 bits (154), Expect = 4e-28 Identities = 421/639 (66%), Gaps = 11/639 (2%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| | ||| | |||| || || | ||||||||| | ||||| | || | Sbjct 3922 CCGCAGCAAATGATTCTGCGTGTAGCGTTAGGCATCCACAAGAGCGACATCAAGTCCGCA 3981 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 ||||||| ||||| ||||| || | || | |||| ||||| || || || ||||| Sbjct 3982 CTGGAGACGTACGAGCTCATGTCGCAGAAGT-TCTTCACGCACGCCACCCCTACTCTCTT 4040 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||| || || || ||| | || ||| |||| ||| ||||| | || | |||| || Sbjct 4041 CAACGCCGGCACGCCACGTCCTCAGTTGTCTTCTTGTTTCCTATTGGCTATGCAGGATGA 4100 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 ||| || | || || || | || || | | | || || ||||| || ||||| || Sbjct 4101 CTCTATTGAGGGCATTTACGACACCCTAAAGCAATGCGCCTGTATCTCTAAATGGGCGGG 4160 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAA 75509 ||||| || || || || | | | |||| ||| | || || || || || | Sbjct 4161 CGGTATCGGTATCAGTATGCACAACATCCGCGCCACTAACAGCTAC-ATCCGCGGCACGA 4219 Query 75510 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569 | || || | || ||||| || ||| | || || ||||||| ||| || ||||||| Sbjct 4220 ACGGCTCCTCTAACGGCATTATCCCCATGTTGCGTGTGTTTAACGACACGGCTCGCTATG 4279 Query 75570 TAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATG 75626 | | || | || || |||||||| || |||| |||||||||| || ||||| | Sbjct 4280 TGGACCAGGGCGGAGGTAAGCGCAAGGGCTCGTTCGCTATCTACTTGGAGCCGTGGCACG 4339 Query 75627 CCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTA 75686 |||| | | |||||||| || | || ||||| ||| | || | || | | | Sbjct 4340 CCGACGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACGGTAATGA-GCTGCACCGCGCC 4398 Query 75687 -GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGT 75745 | || | |||| | |||||| | || || || ||||||||| | || |||| | Sbjct 4399 CGCGACTTGTTTTACGCGCTGTGGGTGCCTGATCTCTTCATGAAGAGAGTGGAGGCCAAT 4458 Query 75746 GGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTGGGTGA 75804 || | ||| | | |||||||| || | || || ||||| | ||| || | ||| || Sbjct 4459 GGCAAGTGGAGTTTGTTCTGTCCCAACGAAGCTCCTGGTCTGTACGAGTGCTG-GGGCGA 4517 Query 75805 GGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGG 75843 ||||||||||| || || |||||| || |||| || Sbjct 4518 TGAGTTTGAAGCTCTGTATGAAAAGTACGAGAAGGAAGG 4556 >seq4510 Length=93785 Score = 120 bits (132), Expect = 4e-22 Identities = 379/575 (66%), Gaps = 12/575 (2%) Strand=Plus/Plus Query 64948 ATTGACAAATACATTAAGGATG-GATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAAC 65006 ||||||| ||||| ||||| | |||| || ||| | || | | ||||| | || Sbjct 47777 ATTGACACGTACATCAAGGACGCGATC-GAGAAGGACCATCTCCTGCGTGCCATTGAGAC 47835 Query 65007 TGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAA-GTCTC 65065 | || ||| | ||||||||| | |||||| | || |||| ||| | || || Sbjct 47836 CATCCCTTGTGTCACGAAGAAGGCTCACTGGGCACTCAAGTGGTGCGACCCGCGTGTATC 47895 Query 65066 GCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGT 65125 ||||| | | |||||||| | || || || |||||| || ||||||||||| || | Sbjct 47896 -CTCCTACCCAGAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGGCATCTTCTTCTCGGGCT 47954 Query 65126 CATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAA 65185 | |||||| | || | |||| | |||||||| || |||||||| || || ||||||| | Sbjct 47955 CTTTCTGCTCCATCTTTTGGCTAAAGAAGCGCGGCCTCATGCCCGGTCTGAGCTTCTCGA 48014 Query 65186 ATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGA 65245 | || || || || || ||||| | ||| ||| || ||| || || || | Sbjct 48015 ACGAGCTCATCAGTCGTGACGAGGGCATGCACACGGACTTCGCC-TG--CCTTTTGTACT 48071 Query 65246 CTTTGC--GTAATAGACCCACTACCGAAAC-TATCCACGCCATCGTGAAAGAGGCGGTTG 65302 | || || | | | | | || | | | |||| ||| | || || || | Sbjct 48072 CCAAGCTGGTCACCAAGCTGCCAGAGAGCCGTGTACACGAGATCATTCGTGACGCTGTGG 48131 Query 65303 AGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGT-AATCTCATCGGTATGAACTCT 65361 ||||||| | | ||| | ||| | ||||| ||| | || || |||||||||||| Sbjct 48132 TGATTGAGCACGAGTTTGTGCGTGACTCGCTCCC-TGTGGAGCTGATTGGTATGAACTCT 48190 Query 65362 GAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTG 65421 | |||| | |||||||||||| ||| | || ||||| ||| | |||| ||| Sbjct 48191 GCCCTCATGTGCCAGTACATTGAGTTCGTGGCTGACCGTCTGCTCTACTCGCTTGGTGTG 48250 Query 65422 CCACCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGG 65481 | || | |||| ||||| || ||||||| ||||| | || || | || Sbjct 48251 TCCAAGATCTACCACGCTAAGAACCCTTTTGACTGGATGGACATGATCTCTCTCCAAGGC 48310 Query 65482 AAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 ||||||||||| || |||||||| || || || || Sbjct 48311 AAGACCAACTTTTTCGAGAAGCGTGTGGGCGAGTA 48345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596521210748320