Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq812 136 1e-26 seq230 107 6e-18 seq3161 89.7 2e-12 seq3050 84.2 6e-11 >seq812 Length=17692 Score = 136 bits (150), Expect = 1e-26 Identities = 207/292 (71%), Gaps = 2/292 (1%) Strand=Plus/Minus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 |||||| | | |||| | |||||| ||||| | |||||||| || || ||||| Sbjct 9345 ATCATAGCGAGTCATGACCGATTCCATTGCCTTGACAAGTCGACGCTGGATGTATCCAGT 9286 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | || || |||||||||||||| ||||| |||||||||||||||| |||||||| Sbjct 9285 CTCGGCCGTCTTCACAGCTGTATCAATCAGACCTTCACGACCACCCATAGCGTGGAAGAA 9226 Query 302673 TAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGG 302731 | ||||| ||| ||| | ||| | | ||| | || ||||||||||| ||||| Sbjct 9225 AAACTCTTGCGG-CGTCAAACCCTTCAGGTACGAGTTTTCCACGAAACCACGACTCTCGG 9167 Query 302732 GCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATAC 302791 | ||| |||| | |||||||||| || | | | | ||||| ||||| | Sbjct 9166 GACCCAGGTCATCCTTGCCATAGTGTGGCAGTGTACGATGGTTGAAACCGTACGGGATTC 9107 Query 302792 GCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 |||| || |||||||||||||| |||| || | || ||||| || ||||| Sbjct 9106 GCTTACCTTCAACGTTCTGCTGACCCACACAAGCGATAATCTGGGAGATATT 9055 >seq230 Length=49732 Score = 107 bits (118), Expect = 6e-18 Identities = 178/257 (69%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 ||||| | ||| || ||| ||||| || || | || || || || | || |||| Sbjct 9190 GCGATGATACCGCAGATATCGCACACGTGCACACGATACGCGTCCGAGTTGGCAAATAGT 9131 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 ||| || || |||| | | ||||| || |||| |||||| ||||||||||| || Sbjct 9130 CGATCCATGAGGAAGTTGGCCGAGCCGTGGGAGATCAGACAATCGCGCTCCATTTCTCCC 9071 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATA 251583 | || |||||||| || ||||| | ||| || |||||||| || | | || | Sbjct 9070 ATTCGCAGACCACCTTCACGAGCACGACCTTCCATGGGCTGACGCGTCAACATCGTCACA 9011 Query 251584 GGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAAT 251643 ||||| || || || |||||| | ||||||||||| |||||||||||||| Sbjct 9010 GGACCACGAGAACGCGAGTGGATCTTATCGTCGACCATATGCTTCAGACGCTGGTAGAAC 8951 Query 251644 GCGGGACCGATGAAGAT 251660 | ||| || |||||||| Sbjct 8950 GTGGGTCCAATGAAGAT 8934 >seq3161 Length=25874 Score = 89.7 bits (98), Expect = 2e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 354003 CTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTC 354062 ||| || || | || || |||||||||||||| ||||| ||| | || || || || || Sbjct 15922 CTTGATGGCCGAAGCAAGGGCACCAAGCGAGTCGCGGTCAAGGTAGTTCGTGGGCTCATC 15863 Query 354063 AAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTG 354122 ||| | || | |||||| | || |||||| || || ||||| || ||||| |||||||| Sbjct 15862 AAGCACCAGGATGTGCGGGTTCAGCCACATAGCAGCGGCCAGCACAACCTTCACCTTCTG 15803 Query 354123 TCCGCCTGATAG 354134 || || || || Sbjct 15802 ACCACCGGACAG 15791 >seq3050 Length=5167 Score = 84.2 bits (92), Expect = 6e-11 Identities = 68/80 (85%), Gaps = 2/80 (3%) Strand=Plus/Plus Query 410494 TGACGCAATGGATAGCGTGCCAGACTTCTAATCTGGAAGTTGCGGGTTCGAGTCCCGTCG 410553 || ||||||||||||||| |||||||| ||||||| ||||||||||||||||||| || Sbjct 1680 TGGCGCAATGGATAGCGTATCAGACTTCGAATCTGGGGGTTGCGGGTTCGAGTCCCG-CG 1738 Query 410554 T-GGGTAAtttttttAATTT 410572 | | |||||| ||| | ||| Sbjct 1739 TCGCGTAATTCTTTGATTTT 1758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471695232624793