Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4510 185 1e-40 seq4581 141 1e-27 seq1973 134 2e-25 seq4588 127 2e-23 seq295 122 1e-21 seq3143 116 5e-20 >seq4510 Length=93785 Score = 185 bits (204), Expect = 1e-40 Identities = 222/299 (74%), Gaps = 2/299 (1%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 ||||||| |||||||| ||||||||||||||||| || ||| | |||| | ||| | Sbjct 47759 CCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGGCACCT 47700 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | || || || |||| ||||| ||||||| |||||| ||||| ||||| |||| Sbjct 47699 GCACTTCGTTGCTGAAGTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTGGCTGCGA 47640 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 | || || || ||||||||||| ||||| ||||||| ||| ||||| ||||| Sbjct 47639 AGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTTGCTCCAGTCCT 47580 Query 869811 CGGTGTCG-GCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | |||| || | ||||| | |||||| || ||||||| ||||||||||| || ||| Sbjct 47579 TGAGGTCGTGCAC-AAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCTTTCTTG 47521 Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 ||||||| ||| |||| || | | || ||||| || || || ||||||||||| || Sbjct 47520 TACATCTGCCACACTTCGTGTTCCTGAATGGGGAACAGCACGAAACGGTTGGGGTTCTC 47462 Score = 179 bits (198), Expect = 5e-39 Identities = 234/316 (74%), Gaps = 6/316 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||||| |||||||||||| ||| ||||||||||||||||||||| | ||| |||||| Sbjct 48354 GCCTTGGAGTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATC 48295 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTT-CGCATCCGAGCGACGC 868809 | |||||||| || ||||| | | |||| ||| | || || ||||| Sbjct 48294 ATGTCCATCCAGTCAAAAGGGTTCTTAGCGTGGTAGATCTTGGACACA-CCAAGCGAGTA 48236 Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 |||||| ||||| || || ||||| |||||||||||||||||| | | |||||| || || Sbjct 48235 GAGCAGACGGTCAGCCACGAACTCAATGTACTGGCACATGAGGGCAGAGTTCATACCAAT 48176 Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACG-A 868928 ||| |||| || ||||| || | ||||||||| | ||| ||| | || || || ||| | Sbjct 48175 CAGCTCCACAGGGAGCGAGTCACGCACAAACTCGTGCTCAATCACCACAGCGTC-ACGAA 48117 Query 868929 TGATCTGCCTGGGCACGTC-GGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAG 868987 |||||| | || |||| | | | ||||| |||| ||| | | ||| | |||||| Sbjct 48116 TGATCT-CGTGTACACGGCTCTCTGGCAGCTTGGTGACCAGCTTGGAGTACAAAAGGCAG 48058 Query 868988 GCAAAGTCGCAGTGCA 869003 || ||||| ||||| Sbjct 48057 GCGAAGTCCGTGTGCA 48042 Score = 150 bits (166), Expect = 2e-30 Identities = 208/286 (73%), Gaps = 5/286 (2%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| |||||||| | ||||| ||| || ||||||||||||||||||||| Sbjct 48039 CCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCATGAGGCCGCGCTTC 47980 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC-AAA 869298 || ||||||||||||| ||||||| ||||||||| |||||||| || || || || ||| Sbjct 47979 TTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCTTCCACAGCAGCGAAA 47920 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 ||| | || ||||| | ||| | || | | | || | |||||| | ||||| Sbjct 47919 GCC-AGCAGGCGCTCTGGGTAGGAG--GATACAC-GCGGGTCGCACCACTTGAGTGCCCA 47864 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418 || ||||| ||| | || | || | || || ||||| || | ||| |||||||| || Sbjct 47863 GTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGCAGGAGATGGTCCTTCTC 47804 Query 869419 GGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTCC 869464 | || |||||||| || ||||| || || || || ||| |||| Sbjct 47803 GATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTAGACCTCC 47758 >seq4581 Length=10530 Score = 141 bits (156), Expect = 1e-27 Identities = 213/303 (70%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || |||||| || ||||| |||||||||||||| || || | |||||| | | |||||| Sbjct 4290 GCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGGGATAATGCCGTT 4231 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 || |||||| ||||| | |||| | | |||||| | |||||| | Sbjct 4230 AGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTGAT 4171 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 ||||| ||||| ||| | || ||||| ||||| || || || |||||||| ||||| Sbjct 4170 ACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTGTCGTAAATGCC 4111 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 ||| || ||||| ||| ||| ||| || || || || || || || | | ||| Sbjct 4110 CTCAATAGAGTCATCCTGCATAGCCAATAGGAAACAAGAAGACAACTGAGGACGTGGCGT 4051 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA 1630361 ||||||||||||||| || || || || ||||| |||| | |||||||| ||||| Sbjct 4050 GCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTA 3991 Query 1630362 GGT 1630364 || Sbjct 3990 CGT 3988 Score = 131 bits (144), Expect = 2e-24 Identities = 268/406 (66%), Gaps = 6/406 (1%) Strand=Plus/Minus Query 1628198 TCGTACCCAGGTTCTGCTGGTTGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGG 1628257 ||||||||| ||||||||| || | | |||| | |||||||||| ||||||| ||| Sbjct 4690 TCGTACCCAAGTTCTGCTGATTCGACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGG 4631 Query 1628258 GCGCGCCGGTCTCGATCTGCGCCGCGACGATGGCCGACCAGATCTGGCGCGCGGGCACGA 1628317 || | || ||||| ||||| || | | ||| || |||| | ||| | ||| || Sbjct 4630 GCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACCACAGCTGCTGAGCGTT---GA 4574 Query 1628318 CAGTC---CGCGCGCGGCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGC 1628374 ||| ||||| || || | ||||| | ||| Sbjct 4573 TTGTCTTACGCGCACGTCCTTCCTTCTCGTACTTTTCATACAGAGCTTCAAACTCATCGC 4514 Query 1628375 CGTAGCACTCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGG 1628434 | ||||||||| ||| || || || ||| ||||| || | ||| | |||| || Sbjct 4513 CCCAGCACTCGTACAGACCAGGAGCTTCGTTGGGACAGAACAAACTCCACTTGCCATTGG 4454 Query 1628435 TCACCGCGCGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCC 1628494 | || | | ||| ||||| ||| | |||||| |||||||| | |||||| || | Sbjct 4453 CCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGC 4394 Query 1628495 GGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCC 1628554 ||| | ||| || ||||||||||| || || || | |||| | ||||||||||| Sbjct 4393 GGTGCAGCTCATTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACACGTCGGCGTGCC 4334 Query 1628555 ACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 ||||||||| |||| || || | |||||||||||| || ||||| Sbjct 4333 ACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCTCCGCC 4288 >seq1973 Length=94046 Score = 134 bits (148), Expect = 2e-25 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| || ||| | | || || |||||||| |||||||||||||| || | ||| Sbjct 74912 GCCAGCTCACCGGGGAGCATGAGACGCACGGCAGTCTGGATCTCGCGGCTGGACAGCGTC 74971 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||| | ||| ||| ||||||||| | | ||||||| |||| |||||| Sbjct 74972 GACTTCTTGTTGTAACGCGACAGCTTGCCGGCCTCCGAGGCGATGCGCTCGAAAATGTCG 75031 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTG-TTGGAGATGCCCACGTCGGGGTGCAC 1254526 |||| ||||||||||||| |||||| | | | ||| ||| ||| |||||||||||| Sbjct 75032 TTGATGAACGAGTTCATGATCGACAT-GCCGCGCTTGCTGATACCCGTGTCGGGGTGCAC 75090 Query 1254527 CTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 ||| ||||||||||||||| | | ||||||||| Sbjct 75091 CTGACGCAGCACCTTGTAGATGTAGGTCGAGTACGA 75126 >seq4588 Length=18981 Score = 127 bits (140), Expect = 2e-23 Identities = 254/370 (69%), Gaps = 6/370 (2%) Strand=Plus/Minus Query 1573873 ACATGCCCAACCTCTTGCTGGCGGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGT 1573932 ||||| | || ||| | || | || || || || || || || || |||||||| || Sbjct 15306 ACATGACGAATCTCATCCTCTCCGGCCCTCCAGGAACTGGTAAAACAACGAGCATTTTGT 15247 Query 1573933 GTCTGGCGCGTGTCCTCTTGGGCGCGGCCGC-CGACG-AGGCCGTGCTCGAACTCAACGC 1573990 |||||||||| | || | || || | || ||| | |||| ||||| || ||||| || Sbjct 15246 GTCTGGCGCGCGAGCTGCTCGGTGC--CAGCACGAAGCAGGCGGTGCTGGAGCTCAATGC 15189 Query 1573991 GTCGGACGAGCGCGGCGTCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAG 1574050 ||| || || ||||| ||||| || |||| | |||||| ||| ||| Sbjct 15188 GTCCGATGATCGCGGTATCGACACGGTACGCAGTAAGATCAAGATGTTCGCGCAGCAGAA 15129 Query 1574051 GATCGAC-CTGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCA 1574109 | | ||| || || || |||||||||||| | |||| | ||||||||||||| | | Sbjct 15128 GGT-GACACTTCCCCCTGGACGCCACAAGATCGTCATATTGGACGAGGCCGACTCAATGA 15070 Query 1574110 CGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCT 1574169 | | || ||||||||||| || || || ||||| | | | |||||||| | Sbjct 15069 CAGCTGCAGCCCAGCAGGCTCTACGACGTACTATGGAGATCTTCTCGGCAACGACGCGAT 15010 Query 1574170 TTGCCCTGGCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCA 1574229 | || |||| ||||||| || | | | |||| ||| || | || ||||||||||||| Sbjct 15009 TCGCATTGGCCTGCAACAACTCCACCAAGATCATTGAGCCCATTCAGAGTCGCTGCGCCA 14950 Query 1574230 TTCTGCGCTT 1574239 | ||||| || Sbjct 14949 TCCTGCGTTT 14940 >seq295 Length=40714 Score = 122 bits (134), Expect = 1e-21 Identities = 287/431 (67%), Gaps = 2/431 (0%) Strand=Plus/Plus Query 18060 CATGAGCACATTCGGCAAGGTATTTAGGGTCACCACCTTTGGCGAGTCGCACGGGGCGGG 18119 ||||||||| |||||| | || | || || ||||| |||||||||||| | ||| Sbjct 3230 CATGAGCACCTTCGGCCGCTTCTTCCGCGTGACGACCTTCGGCGAGTCGCACTGCAAGGG 3289 Query 18120 CGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCACTGGCCGAGGCCGACATCCA 18179 ||| ||||||||| | || ||||| || |||| | | || | ||||| |||||||| Sbjct 3290 CGTGGGCTGCATCGTGGATGGCGTTCCCCCGTCGCTCGCTTTGACAGAGGCTGACATCCA 3349 Query 18180 GCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAGCC 18239 ||| ||| | || || || || |||||| || || | || |||||| ||||| Sbjct 3350 GCCGCAGCTCACGCGCCGTCGCCCCGGCCAGAGCAAGCTCACGACCCCGCGCGACGAGAA 3409 Query 18240 CGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGG 18299 || || | ||| | ||||| ||||| ||| ||||||| ||| |||| | | Sbjct 3410 GGACATGGTGACTATCATGAGCGGCACTGAGAAGGGCTTCACGCTTGGCACGCCGCTTGC 3469 Query 18300 CCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGGTGCC 18359 ||||| ||| ||||| || ||| || || || || ||| ||||| Sbjct 3470 ACTCTTCGTGCCCAACGAAAACGTGCGCCCTAAGGATTACAAGGAGATGGATCTTGTGCC 3529 Query 18360 GCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCG-G 18418 || || ||||| |||||||| ||| | |||||||||| | | | | | | Sbjct 3530 TCGCCCGGGCCACGCAGACTACACGTACCAGATGAAGTACGGCA-CGCGCGCTAGCAGCG 3588 Query 18419 GCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCG 18478 |||| ||||| | ||| ||||| ||| | || || || || ||||| || |||| Sbjct 3589 GCGGTGGCCGTGCCAGTGCTCGCGAAACCATTGGCCGTGTAGCAGCTGGCGCTGTGGCCG 3648 Query 18479 AGAAATGGCTC 18489 |||| |||||| Sbjct 3649 AGAAGTGGCTC 3659 Score = 105 bits (116), Expect = 8e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 19065 GTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTGCTTTGACAAGATC 19124 || ||||| ||| ||||||| ||| | || || || ||||| || || |||||||| Sbjct 4095 GTCACGTGTGTGATCCGCAACGCGCCCGTGGGTCTGGGTGAGCCATGTTTCGACAAGATG 4154 Query 19125 GAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGGATTCGAGATTGGC 19184 |||||| || || ||||||||| |||| ||||||||||||||||| |||||||| ||| Sbjct 4155 CAGGCCGTCCTTGCACACGCCATGATGTCCATCCCGGCCACCAAGGGCTTCGAGATCGGC 4214 Query 19185 AGCGGGTT 19192 ||| || Sbjct 4215 TCCGGTTT 4222 >seq3143 Length=83471 Score = 116 bits (128), Expect = 5e-20 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| || ||| | | || || ||||| || ||||||||||| || || | ||| Sbjct 26345 GCCAGCTCACCGGGGAGCATGAGACGCACAGCCGTCTGGATCTCACGGCTGGACAGGGTG 26404 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||| | ||| ||| ||||||||| | ||||||| |||| |||||| Sbjct 26405 GACTTCTTGTTGTAACGCGACAGCTTGCCGGCCTCCGAAGCGATGCGCTCGAAAATGTCG 26464 Query 1254468 TTGACAAACGAGTTCATGACCGACAT-CGACTTGTTGGAGATGCCCACGTCGGGGTGCAC 1254526 |||| || |||||||||| |||||| | || ||| ||| ||| |||||||||||| Sbjct 26465 TTGATGAAGGAGTTCATGATCGACATTCCACGC-TTGCTGATACCCGTGTCGGGGTGCAC 26523 Query 1254527 CTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 ||| ||||||||||||||| | | ||||||||| Sbjct 26524 CTGACGCAGCACCTTGTAGATGTAGGTCGAGTACGA 26559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106606682272013