Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq4581 123 2e-23 seq1842 104 2e-17 seq3968 95.1 1e-14 seq2806 82.4 7e-11 >seq4581 Length=10530 Score = 123 bits (136), Expect = 2e-23 Identities = 355/539 (66%), Gaps = 33/539 (6%) Strand=Plus/Minus Query 138484 TCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAA 138543 || || |||||||| |||| | | | || ||||| ||||| || ||||| ||| Sbjct 5354 TCCTTCATCAGATACTTGTTAACAATCGTGAACTCACCAGCCAACACACGACGGTTGTAC 5295 Query 138544 ATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCG 138603 |||||| ||| ||||||| | || |||||||| ||||| ||||||||||||| || Sbjct 5294 ATGTTGGACGTGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCT 5235 Query 138604 GTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGT--TCCT 138661 ||||||||| || |||| || || || || | |||||| ||| ||| || | Sbjct 5234 GTCGGCATGGGTGCAACCAGCAGCGAGTTACGGAGACCGTGTTTAATGA--CGTCATCTT 5177 Query 138662 TGAGCGACGACCAGTCCCACAAATC-GCT--AGGTTTTTTGTTCCACATATCGTACTGTA 138718 | || | | ||||| ||| | | | | |||| | | |||||| ||| |||| | Sbjct 5176 TTAGTGCGGCCCAGTTCCAAAGCCCAGATGAAGGTGTGACGCCCCACATGTCGAACTGGA 5117 Query 138719 ACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCA 138778 | || ||| ||| || ||| ||| | | ||| ||||| ||| || || || | Sbjct 5116 AGATACCCTTACTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCCAATTCCGTGGCAA 5057 Query 138779 ACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCA 138838 ||| | || ||| | ||| || |||| || || ||| || || | ||| || Sbjct 5056 TCTCCATCGACGTCTCCATGGCAGCAAAGTAGATCGTCTCG--AAGATG-TTCTTGTTCA 5000 Query 138839 AT---CGGGCCTCGGCGCTCTCGTACG------GCATGCGGAGCATCGTGAACGCGTCGG 138889 || || || | | ||||||| ||| |||| ||| ||||||| || | Sbjct 4999 ATTCACGAGCTTGCGGGCTCTCGAACGCGTAGTTCATGAGGA------TGAACGCATCCG 4946 Query 138890 CCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCG---- 138945 |||| || || ||||| | || | || |||||||||| || ||| ||||| Sbjct 4945 CCAGACCCTGGACGCCAATACCAATGGGACGATGGCGCATGTTGGAC----TTGCGAGCC 4890 Query 138946 GCTTCGATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTT 139004 || | | |||||||||||| || ||||||| ||||| | || ||| || |||||| Sbjct 4889 TCTGCAACAGGATAATAGTTGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTT 4831 >seq1842 Length=4307 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||| | ||||| || || ||||| ||||| || || | | Sbjct 4299 ATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACCCTCGACGTGGAGCCGTCG 4240 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || ||||| || ||||| ||||| || || || || || Sbjct 4239 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGACCAG 4180 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| || || || ||||| ||||| | | | || || || ||| Sbjct 4179 CAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGAGCGACTACAAC 4120 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| ||||| |||| | ||||| || Sbjct 4119 ATCCAGAAGGAGTCTACTCTTCACCTGGTGCTGCGTCTTCGCGGTGG 4073 >seq3968 Length=9653 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || ||||||||||| ||||| ||||| || || || || || || ||||||||||| Sbjct 9653 GTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAGCGTTTGATCTTC 9594 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 || || || ||||||||||| | | || || || ||||| || ||||| || Sbjct 9593 GCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGTGACTACAACATCCAGAAGGAGTCT 9534 Query 24899 ACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||| ||||| |||| |||| || || Sbjct 9533 ACACTCCACCTGGTGCTGCGTCTGCGTGGCGG 9502 >seq2806 Length=38520 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || || |||||||| || || | | Sbjct 7489 ATGCAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 7430 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || | || || || || ||||| ||||| || ||||| || || || || Sbjct 7429 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATCCCGCCTGACCAG 7370 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || || ||||||| ||||| || ||||| ||||| Sbjct 7369 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGA 7335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449861107680920