Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq4510 219 7e-51 seq1973 174 2e-37 seq3143 152 8e-31 seq4581 136 6e-26 seq4588 132 8e-25 seq5887 96.9 5e-14 >seq4510 Length=93785 Score = 219 bits (242), Expect = 7e-51 Identities = 248/329 (75%), Gaps = 9/329 (3%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| |||||||| | ||||| |||| || ||||||||||||||||||||| Sbjct 48039 CCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCATGAGGCCGCGCTTC 47980 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC-AAA 794459 || ||||||||||||| |||||| ||||||||| |||||||| || || || || ||| Sbjct 47979 TTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCTTCCACAGCAGCGAAA 47920 Query 794460 GCCGACGAGCCGCTC--GGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCC 794517 ||| | || ||||| || | || | || || || | |||||| | ||| Sbjct 47919 GCCAGC-AGGCGCTCTGGGTAGGAGGATACACGCGG-----GTCGCACCACTTGAGTGCC 47866 Query 794518 CACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTC 794577 || | ||||| ||| | || | || | || || ||||| || | ||| ||||||||| Sbjct 47865 CAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGCAGGAGATGGTCCTTC 47806 Query 794578 TCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTT 794637 |||| || |||||||| ||| ||||| ||||| || |||||| ||| ||||| ||||| Sbjct 47805 TCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTAGACCTCCGAGTGAATGTTC 47746 Query 794638 TCGATGGCGATCTGGAAGCCATAAAAGCA 794666 || |||||||||||||||||||| ||||| Sbjct 47745 TCAATGGCGATCTGGAAGCCATAGAAGCA 47717 Score = 176 bits (194), Expect = 7e-38 Identities = 230/313 (73%), Gaps = 4/313 (1%) Strand=Plus/Minus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 ||||| ||||||| ||||||||||| ||| ||||||||||||||||||||| | ||| Sbjct 48360 ACGCCGGCCTTGGAGTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGA 48301 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCAC-CCGAG 794011 ||||||| |||||||| || ||||| | ||||| ||| ||| || || Sbjct 48300 GAGATCATGTCCATCCAGTCAAAAGGGTTCTTAGCGTGGTAGATCTTGGA-CACACCAAG 48242 Query 794012 CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCAT 794071 ||| ||||| ||||| || ||||| ||||||||||||||||||||||| | |||||| Sbjct 48241 CGAGTAGAGCAGACGGTCAGCCACGAACTCAATGTACTGGCACATGAGGGCAGAGTTCAT 48182 Query 794072 GCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 || || ||| |||| || ||||| || | |||||||| | ||| ||| | || || || Sbjct 48181 ACCAATCAGCTCCACAGGGAGCGAGTCACGCACAAACTCGTGCTCAATCACCACAGCGTC 48122 Query 794132 GATGATGATCTGCCTGGGCACGTCGGAC-GACGGCTTGTCGACGAGCATCGTGTAGAGCA 794190 ||||||| | || |||| | | | | ||||| ||| ||| | | ||| | | Sbjct 48121 ACGAATGATCT-CGTGTACACGGCTCTCTGGCAGCTTGGTGACCAGCTTGGAGTACAAAA 48063 Query 794191 GGCAGGCAAAGTC 794203 ||||||| ||||| Sbjct 48062 GGCAGGCGAAGTC 48050 Score = 172 bits (190), Expect = 9e-37 Identities = 203/271 (75%), Gaps = 8/271 (3%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 |||||||| || || || || || ||||| ||||| |||||| |||||| ||| Sbjct 47712 GCCTCGGGCACCTGCACTTCGTTGCTGAAGTTCATGGCCAAGTTCTCGTTCACGATACCG 47653 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||||| ||||| |||||||| ||||||||||| ||||| ||||||| ||| ||||| Sbjct 47652 TCACTGGCTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGC 47593 Query 796270 GAGACCCAGTGGACCGT---GTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 | ||||| || | |||| | ||||||| |||||| || ||||| |||||| Sbjct 47592 TTGCTCCAGT---CCTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAG 47536 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCATA-TCCGTTGGTAGCGGATGGGGAACAGAACAAA 796385 |||||||| || |||||||||| ||| | | || || | | ||||||||||| || || Sbjct 47535 GCCTCGGCTTTCTTGTACATCTGCCACACTTCG-TGTTCCTGAATGGGGAACAGCACGAA 47477 Query 796386 GCGATTGGGGTTCTCGCGTAGCAGCGGCTCG 796416 || ||||||||||| || | ||||||| Sbjct 47476 ACGGTTGGGGTTCTCAACGAGGAACGGCTCG 47446 >seq1973 Length=94046 Score = 174 bits (192), Expect = 2e-37 Identities = 194/259 (75%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| |||||||| || ||||| || ||||||||| | ||||| || ||| | | Sbjct 74868 TGAACTTGGTCACGGCCTTCGTGCCCTCCGACACGGCGTGCTTAGCCAGCTCACCGGGGA 74927 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || |||||||| ||||||||||||||| || | ||| |||||| | Sbjct 74928 GCATGAGACGCACGGCAGTCTGGATCTCGCGGCTGGACAGCGTCGACTTCTTGTTGTAAC 74987 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| ||| ||||||||| | | ||||||| |||| |||||||||| |||||||||| Sbjct 74988 GCGACAGCTTGCCGGCCTCCGAGGCGATGCGCTCGAAAATGTCGTTGATGAACGAGTTCA 75047 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||| ||| ||| ||| ||||||||||||||| |||||||||| Sbjct 75048 TGATCGACATGCCGCGCTTGCTGATACCCGTGTCGGGGTGCACCTGACGCAGCACCTTGT 75107 Query 1485710 AAACAAAGGACGAGTACGA 1485728 | | ||| ||||||||| Sbjct 75108 AGATGTAGGTCGAGTACGA 75126 >seq3143 Length=83471 Score = 152 bits (168), Expect = 8e-31 Identities = 189/259 (73%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| || ||||| || || ||||| ||||||||| | ||||| || ||| | | Sbjct 26301 TGAACTTGGTCACAGCCTTCGTGCCTTCTGACACGGCGTGCTTAGCCAGCTCACCGGGGA 26360 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || ||||| || ||||||||||| ||| || | ||| |||||| | Sbjct 26361 GCATGAGACGCACAGCCGTCTGGATCTCACGGCTGGACAGGGTGGACTTCTTGTTGTAAC 26420 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| ||| ||||||||| | ||||||| |||| |||||||||| || ||||||| Sbjct 26421 GCGACAGCTTGCCGGCCTCCGAAGCGATGCGCTCGAAAATGTCGTTGATGAAGGAGTTCA 26480 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||| ||| ||| ||| ||||||||||||||| |||||||||| Sbjct 26481 TGATCGACATTCCACGCTTGCTGATACCCGTGTCGGGGTGCACCTGACGCAGCACCTTGT 26540 Query 1485710 AAACAAAGGACGAGTACGA 1485728 | | ||| ||||||||| Sbjct 26541 AGATGTAGGTCGAGTACGA 26559 >seq4581 Length=10530 Score = 136 bits (150), Expect = 6e-26 Identities = 212/303 (70%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || |||||| |||||||| |||||||||||||| || || | |||||| | || |||||| Sbjct 4290 GCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGGGATAATGCCGTT 4231 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 || |||||| ||||| | |||| | | |||||| | |||||| | Sbjct 4230 AGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTGAT 4171 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 ||||| ||||| ||| || ||||| ||||| | || || || ||||| ||||| Sbjct 4170 ACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTGTCGTAAATGCC 4111 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 ||| || ||||| ||| ||| |||| || || || || || || || || | ||| Sbjct 4110 CTCAATAGAGTCATCCTGCATAGCCAATAGGAAACAAGAAGACAACTGAGGACGTGGCGT 4051 Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTA 2073836 |||||| |||||||| || || || || |||| | ||| || |||||| |||||| Sbjct 4050 GCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTA 3991 Query 2073837 GGT 2073839 || Sbjct 3990 CGT 3988 Score = 100 bits (110), Expect = 5e-15 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 2071878 CCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAG 2071937 |||||| ||||||| | ||||| || |||| | ||| || ||||||||||| ||| Sbjct 4422 CCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCTCATTACCGTGGTTCTTACGCAG 4363 Query 2071938 GTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTT 2071997 || || | |||| | |||||||||||||||||||| |||| || || | |||||| Sbjct 4362 ATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTT 4303 Query 2071998 GCGCTTGCCGCCGCC 2072012 |||||| || ||||| Sbjct 4302 GCGCTTACCTCCGCC 4288 >seq4588 Length=18981 Score = 132 bits (146), Expect = 8e-25 Identities = 259/376 (69%), Gaps = 10/376 (3%) Strand=Plus/Minus Query 2019006 GGCAACATGCCCAACCTCTTGCTGGCGGGCCCGCCCGGCACGGGCAAGACCACGAGCATC 2019065 || |||||| | || ||| | || | ||||| || || || || || || |||||||| Sbjct 15310 GGTAACATGACGAATCTCATCCTCTCCGGCCCTCCAGGAACTGGTAAAACAACGAGCATT 15251 Query 2019066 GCGTGCCTGGCGCGCGTGCTCTTGGGCGCGGCCGC-CGACG-AGGCCGTGCTCGAACTCA 2019123 ||| |||||||||| ||| | || || | || ||| | |||| ||||| || |||| Sbjct 15250 TTGTGTCTGGCGCGCGAGCTGCTCGGTGC--CAGCACGAAGCAGGCGGTGCTGGAGCTCA 15193 Query 2019124 ATGCGTCAGACGAGCGCGGCGTGGACGTCGTGCGTAGAATCATCAAGCA--TCACGCTTC 2019181 ||||||| || || ||||| | ||| || || || | |||||| || ||| | Sbjct 15192 ATGCGTCCGATGATCGCGGTATCGACACGGTACGCAGTAAGATCAAGATGTTCGCGCAGC 15133 Query 2019182 GAAAAGAATCGAC-CTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACT 2019240 || | ||| || || || || ||||||||| | |||| | || |||||||||| Sbjct 15132 AGAAGGT---GACACTTCCCCCTGGACGCCACAAGATCGTCATATTGGACGAGGCCGACT 15076 Query 2019241 GCCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGA 2019300 | || | || ||||||||||| || ||| || ||||| | | | | |||| Sbjct 15075 CAATGACAGCTGCAGCCCAGCAGGCTCTACGACGTACTATGGAGATCTTCTCGGCAACGA 15016 Query 2019301 CGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTT 2019360 |||| || || |||||||||||| || | | | |||| || || | ||||| || | Sbjct 15015 CGCGATTCGCATTGGCCTGCAACAACTCCACCAAGATCATTGAGCCCATTCAGAGTCGCT 14956 Query 2019361 GCGCCATCTTGCGCTT 2019376 |||||||| |||| || Sbjct 14955 GCGCCATCCTGCGTTT 14940 >seq5887 Length=23307 Score = 96.9 bits (106), Expect = 5e-14 Identities = 285/437 (65%), Gaps = 2/437 (0%) Strand=Plus/Minus Query 118582 CGCCCAGGAGGACGCGCGTGACCGTGTTTGACCCGTTCTTGCGCACGCCGCGCATGCACA 118641 |||| || | | || |||||| ||| | | ||| |||| ||||||||||||| || Sbjct 14406 CGCCGAGTACGGAGCTCGTGACGGTGCTGGCTCCGCTCTTCTCCACGCCGCGCATGACCA 14347 Query 118642 CGCACATGTGGAGGCCCTCGAGCACGACGCCGACGCCGCGCGCGCCCGTGACCTCGCTGA 118701 |||||||| | |||| | || || | ||||| | | |||| | | | Sbjct 14346 TACACATGTGTGTGGCCTCAATGACCACAGCCACGCCCTTGGGTTCAATGACGCCCATAA 14287 Query 118702 TGCTCTCGGCGATCTGGCGCGTGAGCGCCTCCTGCACCTGGAAGCGGTCCGAGAGCATGT 118761 || | |||||||| || || |||||||||||| | || ||||| | | Sbjct 14286 TGGCATTAGCGATCTGCTTTGTCAGTCGCTCCTGCACCTGCAGACGACGCGAGAAGACCT 14227 Query 118762 CGACGATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGCGGGCAGGTAGCCCACGT 118821 || || |||| | |||||| || || | | |||| ||| | ||| || | || Sbjct 14226 CGCTGACTCGCGCCAGCTTGCTGAGTCCCAATACTTTGCCATTGGGGATGTACCCGATGT 14167 Query 118822 GCGCCTTGCCGATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCAATGTCGC 118881 || | ||||| | || |||| || |||||||||||||||||| | | ||| || || | Sbjct 14166 GCACTTTGCCCGTGAACGGCACCATGTGGTGCTCGCACATGGAGTAGAGGTCGATATCAC 14107 Query 118882 GCACGGTCACCATCTCGCCCGACGT-CTCGGCAAAGAGGGCGTCGCCGACGGCCTCGGCC 118940 |||| | ||||||||| || || ||| | || | || ||| | | |||| Sbjct 14106 GCACAATGACCATCTCG-TCGTGGTCCTCTTCGAACACAGCCTCGTTCAATACGTCGGTT 14048 Query 118941 AGGGTCAGGCGGTGGCCGCGCGTGCGCTCCACCATGGCCTTGGCCACGCGCATGGGCGTG 119000 ||| || ||| || ||| ||| | || | ||||||||||| |||||| ||||| Sbjct 14047 AGGCTCTGGCCGTAGCCCTTGGTGTTGTACAATAAGGCCTTGGCCATGCGCATAGGCGTC 13988 Query 119001 TCCAAGAGGCCCTCGCG 119017 | | ||| || ||||| Sbjct 13987 TTGACGAGCCCTTCGCG 13971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915556135473671