Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_022976.1 Length=75894 Score E Sequences producing significant alignments: (Bits) Value seq2953 100 1e-16 >seq2953 Length=18592 Score = 100 bits (110), Expect = 1e-16 Identities = 323/496 (65%), Gaps = 19/496 (4%) Strand=Plus/Plus Query 66241 GCCTACATCGACGCTGAGCACTCCCTGGACCCCGAGTACGCCAAGGCGCTCGGTGTGGAC 66300 |||| || || || |||||| | | ||| || | ||||||||||| || || ||||| Sbjct 8825 GCCTTTATTGATGCAGAGCACGCTATCGACGCCCACTACGCCAAGGCTCTGGGAGTGGAT 8884 Query 66301 CTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGAC 66360 | ||| |||| || ||||| ||| |||| || | || |||||||||| ||| Sbjct 8885 ATTGACGCCCTCTACGTCTCGCAGCCAGACTCTGGAGAAGAAGCTCTGGAGATCGCAGAC 8944 Query 66361 CTCCTCGTCAAGTCTGGCGAGCTGT--CCATCGTCGTCGTTGACTCTGTGGCGGCCCTGG 66418 ||| || || | | ||||| | | || || | || |||||| || |||| Sbjct 8945 ACGCTCATCCGATC--GGGTGCTGTAGACCTTGTGGTGCTGGATAGTGTGGCAGCTCTGG 9002 Query 66419 TGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCC 66478 |||| || |||||||| || || || || || ||| || | | || || ||||| | Sbjct 9003 TGCCTCGTGCCGAGCTGGAGGGTGAAATGGGAGACCAGCAGATTGCTCTACAAGCGCGTC 9062 Query 66479 TCATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGA 66535 | ||| ||||| || | ||||| ||||| | | |||| |||| ||| | | Sbjct 9063 TTATGAGCCAGGCACTGAGAAAGCTGACCGGGTCACTGTCCAAGTCCAATTGCACCATTA 9122 Query 66536 CGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGG---CAACGTGGGCTACGGCCCGAATG 66592 ||| |||||||| | || |||| | || || | | || | | ||| | Sbjct 9123 ---TCTTCCTCAACCAGATCCGTCAGAAAGTAGGTATCATCTTTGGATCC--CCC----G 9173 Query 66593 AGACCACCACGGGCGGAAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTC 66652 || || | || || | ||| ||| | | |||||| || || || ||||| |||| | Sbjct 9174 AGGTGACGTCAGGTGGTACGGCATTGCGCTACTACGCGTCGGTGCGGCTGGATATCCGCC 9233 Query 66653 GCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAAGTCG 66712 | | | || ||||||||||| ||| |||||||||| || ||| || || | Sbjct 9234 GTAAGACAGCCATCAAGGAAGGCGACCAGGTTGTCGGCAACGAGACGGTGGTCAAGGTGG 9293 Query 66713 TCAAGAACAAGCTGGC 66728 |||||||||| |||| Sbjct 9294 CCAAGAACAAGTTGGC 9309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242716803299295