Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq1842 87.8 1e-12 seq2906 82.4 6e-11 >seq1842 Length=4307 Score = 87.8 bits (96), Expect = 1e-12 Identities = 164/240 (68%), Gaps = 1/240 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || || || ||||| ||||||||| |||| |||| | Sbjct 4299 ATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACCCTCGACGTGGAGCCGTCG 4240 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || | ||| | | || || || |||||| || || |||||| | || || ||| Sbjct 4239 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGACCAG 4180 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||||| || || ||||||||| Sbjct 4179 CAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGAGCGACTACAAC 4120 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGG-GGGAAATAATAAAAA 107794 || || ||||||||||| | ||| ||||| || | | || || || || ||| ||||| Sbjct 4119 ATCCAGAAGGAGTCTACTCTTCACCTGGTGCTGCGTCTTCGCGGTGGTAACTAAAAAAAA 4060 >seq2906 Length=21328 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| ||||| ||||| || | || ||||| ||||| || |||| |||| | Sbjct 18461 AAAATGCAGATTTTCGTCAAGACCCTTACGGGCAAGACCATCACGCTCGACGTGGAGCCG 18402 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || | | | | | || || || || ||| || || || || | || || Sbjct 18401 TCGGACAGCATTGACAATGTCAAGCAGAAAATTCAGGACAAGGAGGGAATCCCGCCTGAC 18342 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || || | || || || ||||| ||||||| | || || |||||||| Sbjct 18341 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTGTCGGACTAC 18282 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| || |||||||| || ||||| ||||| || | |||| || || Sbjct 18281 AACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGTCTGCGTGGTGG 18232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398845254952921