Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq4581 322 5e-83 seq1842 154 1e-32 seq2906 136 4e-27 seq2806 125 7e-24 seq4510 113 4e-20 seq3968 105 6e-18 seq3969 84.2 2e-11 >seq4581 Length=10530 Score = 322 bits (356), Expect = 5e-83 Identities = 1196/1843 (65%), Gaps = 50/1843 (3%) Strand=Plus/Minus Query 147953 GCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGACGA 148012 ||||| ||||||||||| |||||||| ||| | ||| ||||| ||||| |||| Sbjct 5643 GCGCATGTAGTACATGCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGT 5584 Query 148013 CATGAGCGTGTACGTCGGGTGCGGC-ACAAACAGATTAAACGACTGGCTCTGGTCAATGA 148071 || || ||||||| |||| | | || |||||||| |||||| || Sbjct 5583 CAGCTTACTGATAGTCGGGT-CGGCGATGTGGATGTTCAACGACTGACTCTGGCAGATAT 5525 Query 148072 ACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT-CTTCATCTCCCAGGCCGTC 148130 | |||||||||||||| | || || | || || || | ||| |||||||| ||||| Sbjct 5524 AAGCGCCACGGTCAGCCGACAGGTCCA-GAACAGCCTTCTGCTTGATCTCCCACACCGTC 5466 Query 148131 TTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCGGTGC 148190 |||||| | ||| | || ||| |||||| | | || |||||||||||| | | Sbjct 5465 TTGTACTTCTCCTTAACATCATCCGGAATGTCCTTGACCTTCTGCACCGAGCCACCATCA 5406 Query 148191 GCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATCGATC 148250 | ||||||||| || | ||| ||| | | | ||||||||| || || | ||| Sbjct 5405 TTCAGAATCTGATTACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATC 5346 Query 148251 AGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTC 148310 ||||||| || || | | ||||| || || | ||| || || |||| |||| | Sbjct 5345 AGATACTTGTTAACAATCGTGAACTCACCAGCCAACACACGACGGTTGTACATGTTGGAC 5286 Query 148311 GTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATG 148370 || | || || | |||||||||||||||| ||||| || || | || || |||||| Sbjct 5285 GTGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATG 5226 Query 148371 TACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCC 148430 || |||||||||||||| || | |||| | || | | | || || || ||| Sbjct 5225 GGTGCAACCAGCAGCGAGTTACGGAGACCGTGTTTAATGACGTCATCTTTTAGTGCGGCC 5166 Query 148431 CAGTCCCAGAGC---GGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGG 148487 |||| ||| ||| | || ||||| ||| |||||||||| |||| | || || Sbjct 5165 CAGTTCCAAAGCCCAGATGAAGGTGTGACGCCCCACATGTCGAACTGGAAGATACCCTTA 5106 Query 148488 CTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGC-T 148546 || || || ||||| | ||| ||| || || ||| || | || || | Sbjct 5105 CTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCCAATTCCGTGGCAATCTC-CATCGA 5047 Query 148547 CGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGA--GCAGCGCCGCC 148604 || ||| | || | |||| ||||||||| || | | |||| | || || || Sbjct 5046 CGTCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATTCA-CG-AGCT 4989 Query 148605 GACTCGCTTTCGTACGGCATA-CGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCC 148663 | ||| ||| || || || || | | ||||| || || || ||||| ||||| Sbjct 4988 TGCGGGCTCTCGAAC-GCGTAGTTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCC 4930 Query 148664 CACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCT-CGAGCGGATAGTGGT 148722 | |||||||| || || |||||||| ||| || |||| | | ||||| | || Sbjct 4929 AATACCAATGGGACGATGGCGCATGTTGGACTTGCGAGC-CTCTGCAACAGGATAATAGT 4871 Query 148723 TGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTT-----TGTAATTCTG-CGCA 148776 || |||||||| ||||| || |||||| | |||||| | || | | | | Sbjct 4870 TGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTGACCACCTCATACAGTCTCT 4811 Query 148777 GCAATTCAAAATCGTACTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGAT 148836 | || || | || || || || | ||| || || || | ||| || | | Sbjct 4810 TGTAGTCGAA--CACAC-CGTTTTCCAC-AAACATAGG--CAGCGCCACAGACGCCAAGT 4757 Query 148837 TGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGC 148896 ||||||| ||| |||||| || | ||||||| | || ||| ||| | |||||| Sbjct 4756 TGCACACTGCCACCTCATCGGGTGACGTGTACTCCATGACTTCGCAGCATAAGTTGCTGG 4697 Query 148897 ATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCA 148956 | |||| |||| ||||| ||||| ||||| ||| ||||||||||| |||| Sbjct 4696 AACGGATCGTACCCAAGTTCTGCTGATTCGACTTGCGGTTAGCTGCGTCCTTGTAGAGCA 4637 Query 148957 TGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACCGATGCAGGTCCTGCG 149013 || | || | || || || | ||| | || | || ||||| ||| | ||| | Sbjct 4636 TGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACC---ACAGCTGCTGAG 4580 Query 149014 CGCGCACT-TGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCGAAC 149072 || | | | | | || | || || |||| |||||| |||||| || ||| Sbjct 4579 CGTTGATTGTCTTACGCGCA-CGTCCTTCCTTCTCGTACTTTTCATACAGAGCTTCAAAC 4521 Query 149073 GCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACG 149132 | ||||| |||| |||| ||||| || | || || || | | |||| | Sbjct 4520 TCATCGCCCCAGCACTCGTACAGACCAGGAGCTTCGTTGGGACAGAACAAACTCCACTTG 4461 Query 149133 CCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCG 149192 || | || | ||| | |||||| || ||||| |||||||| |||||||| | | |||| Sbjct 4460 CCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCGTAAAACAAGTCG 4401 Query 149193 C--GCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGT 149250 | |||| ||||| || || ||| ||||| | || | ||| | || Sbjct 4400 CGGGCGCGGTGCAG--CTCATTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACACGT 4343 Query 149251 CCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTT---GCCGCCCTGGT 149307 | |||||||||||||| | ||| | |||| || |||||||||||| |||||||||| Sbjct 4342 CGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCTCCGCCCTGGT 4283 Query 149308 CGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGC 149367 | || | ||| || ||| ||||||||| || | ||| || |||||| | | | || Sbjct 4282 CCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGGGATAATGCCGTTAGAGGAGC 4223 Query 149368 CGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGC 149427 |||| || || ||| ||| || || | ||||||| ||| ||||| | Sbjct 4222 CGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTGATACCGATAC 4163 Query 149428 CGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGC 149487 |||| | | || ||||| ||||| | || || ||| |||||||| || Sbjct 4162 CGCCCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTGTCGTAAATGCCCTCAATAG 4103 Query 149488 TGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCG 149547 ||| || ||| | || || || || || ||| || ||| |||||||||| Sbjct 4102 AGTCATCCTGCATAGCCAATAGGAAACAAGAAGACAACTGAGGACGTGGCGTGCCGGCGT 4043 Query 149548 CGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTCGA 149607 ||| | || ||| ||||||| || || | ||||| ||| | |||||||| ||| | Sbjct 4042 TGAAGAGAGTAGGGGTGGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTACGTCTCCA 3983 Query 149608 GCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCG 149667 | || | ||||| |||||||||| || || |||| | ||| ||||||| Sbjct 3982 GTGCGGACTTGATGTCGCTCTTGTGGATGCCTAACGCTACACGCAGAATCATTTGCTGCG 3923 Query 149668 GTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAA---GTAGCCGTTTTCTAGTGTCTTGT 149724 | |||||| |||| ||| ||| | | | || ||||||| || || |||||| Sbjct 3922 GCCGCTCCACCACCTTG---CCATTCACGCGGAAGAGGTAGCCGCGCTCGAGCGTCTTGA 3866 Query 149725 AGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGC 149767 |||| ||||| | ||| || ||||||||| ||||| ||||| Sbjct 3865 AGCCGAAGTAGTCGTACTCGAAGTCGCGGTCGTGGATGATGGC 3823 >seq1842 Length=4307 Score = 154 bits (170), Expect = 1e-32 Identities = 155/199 (78%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| || ||| ||| |||||||||||||||||| Sbjct 4103 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACC-GTCCTCGAGCTGCTTGCC 4161 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| || || |||||||||||||| ||||| ||||| Sbjct 4162 AGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGAATCTTCTGCTT 4221 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | || ||| | ||||||||||||| ||| | ||| |||||||||| || Sbjct 4222 CACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGGGTAATGGTCTTGCCGGTCAACGT 4281 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 4282 CTTCACGAAGATCTGCATG 4300 >seq2906 Length=21328 Score = 136 bits (150), Expect = 4e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||| || || ||| |||||||||||||||||| Sbjct 18261 GGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 18320 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| || ||||| || |||||||| || || ||||| Sbjct 18321 GGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGAATTTTCTGCTT 18380 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| |||| | ||||||||||||| |||| ||| ||||| || || || Sbjct 18381 GACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTAAGGGT 18440 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 18441 CTTGACGAAAATCTGCAT 18458 >seq2806 Length=38520 Score = 125 bits (138), Expect = 7e-24 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||| ||| | || || ||||||||||| || ||||| || ||||| Sbjct 7334 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATTCCCTCCTT 7393 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| ||| || ||||||| | |||| |||| | ||||||||||||| |||| Sbjct 7394 GTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGAT 7453 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 ||| ||||| |||| || || || || ||||||||| Sbjct 7454 GGTCTTGCCCGTCAAGGTCTTCACAAAGATCTGCATG 7490 >seq4510 Length=93785 Score = 113 bits (124), Expect = 4e-20 Identities = 497/768 (65%), Gaps = 19/768 (2%) Strand=Plus/Minus Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413 ||||||||| || || ||||| |||||||| || ||||| | | || || ||| ||| Sbjct 48346 GTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATCATGTCCAT 48287 Query 120414 AAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACT-GTACGAGCAGTC 120472 | || || ||||| | |||| || || | | || | | ||| |||||| | Sbjct 48286 CCAGTCAAAAGGGTTCTTAGCGTGGTAGATCTTGGACACACCAAGCGAGTA-GAGCAGAC 48228 Query 120473 GGTCCGCTACAAACTCAATGTACTCGCACATGGACTGC-GCGTTCATGCCCAGCAACGCC 120531 |||| || || ||||||||||||| ||||||| | || | |||||| || | || | || Sbjct 48227 GGTCAGCCACGAACTCAATGTACTGGCACATG-AGGGCAGAGTTCATACCAATCAGCTCC 48169 Query 120532 ACCGGCAACGCCG-ACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGC 120590 || || | || ||| | |||||| | |||||| |||| || || | || | Sbjct 48168 ACAGGGAGCGAGTCACGC-ACAAACTCGTGCTCAATCACCACAGCGTCACGAATGATCTC 48110 Query 120591 GAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAAA 120650 | | | | | | |||| |||| || || || | ||| | ||||| || || Sbjct 48109 GTGTACACGGCTCTCTGGCAGCTTG-GT--GACCAGCTTGGAGTACAAAAGGCAGGCGAA 48053 Query 120651 GTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCAT 120710 ||||||||||| ||||||||| || || |||||||| || |||| |||||||| Sbjct 48052 GTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCAT 47993 Query 120711 GATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTC 120770 || ||| | |||| | | || |||| | || |||||| ||||| | ||| || Sbjct 47992 GAGGCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCTTC 47933 Query 120771 CACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTG-TCGATCCACT 120829 ||| || || || | || |||||| | | | | | || | ||| ||||| Sbjct 47932 CACAGCAGCGAAAGCCAGCAGGCGCTCTGGGTAGGAGGATA-CACGCGGGTCGCACCACT 47874 Query 120830 TCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAGCAGCA 120889 | | ||||| | ||||| || || || || || ||| | || ||| || Sbjct 47873 TGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGCAGGAGAT 47814 Query 120890 TGTCGCGCTCGCCCTCCTCCGCAATCAGCTGATGGATGAGCAGATTGTACATTTCCGTGT 120949 ||| |||| | | ||| || | | |||||||| ||| | |||| || Sbjct 47813 GGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTAGACCTCCGAGT 47754 Query 120950 GCACGCACTCGATCAGCACTTGCTGGTTG---TAAAAGTACTGCGCCTCCAGCTCGGGCA 121006 | | | ||| || || | |||| | || ||| | | ||||| || | ||| Sbjct 47753 GAATGTTCTCAATG-GCGAT--CTGGAAGCCATAGAAGCAACGAGCCTCGGGCACCTGCA 47697 Query 121007 CCGCCC-GCTGCATGTACTCGATAAGGTTAATATTCACGATACTGTCGGCGGCGGCGAAG 121065 | | |||| | | | | ||| || |||||||||| ||| ||| |||||| Sbjct 47696 CTTCGTTGCTGAAGTTCATGGCCAAG-TTCTCGTTCACGATACCGTCACTGGCTGCGAAG 47638 Query 121066 AACGCCAGCACGTGCTTGATAAAGTGTCGCTCGTCGTCCGTGAGCTTG 121113 || || |||||||||||||| ||||||||||||| ||||||||||||| Sbjct 47637 AAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTTG 47590 >seq3968 Length=9653 Score = 105 bits (116), Expect = 6e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| || | || |||| |||||| ||||||||||| Sbjct 9532 GTAGACTCCTTCTGGATGTTGTAGTCACTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCA 9591 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || | ||||||||||| || ||||||||||||||||| ||||||||||||| Sbjct 9592 GCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTG 9651 Query 133584 A 133584 | Sbjct 9652 A 9652 >seq3969 Length=66925 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 133557 CCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCG 133616 ||||||||||| |||||||||||||| | || | || ||| | ||||||||||| Sbjct 1 CCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCC 60 Query 133617 ACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| || |||||||||| || || |||||||||||||| Sbjct 61 AGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAAATCTGCAT 104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483381588530360