Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq4581 96.9 8e-15 seq1842 96.9 8e-15 seq2906 84.2 5e-11 >seq4581 Length=10530 Score = 96.9 bits (106), Expect = 8e-15 Identities = 170/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 173107 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 173166 ||||||||||||| |||||||||| || ||| ||||| | | || | | Sbjct 4652 GCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAAC 4593 Query 173167 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 173226 || || | || || || | || | | ||| | |||||| || ||||| | ||||| Sbjct 4592 CACAGCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCTTCTCGTACTTTTCATAC 4533 Query 173227 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAG 173286 || |||| || || | || | |||| ||||| |||||||| || ||||| || Sbjct 4532 AGAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAGGAGCTTCGTTGGGACAGAAC 4473 Query 173287 AGACTCCAATTTCCATCGGTCTCGACCCTCTTCATGAAGAGGTCGGAAGTCCAAATCGCG 173346 | |||||| || |||| || ||| || |||||||||||||| || | ||| | |||| Sbjct 4472 AAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCG 4413 Query 173347 TAGAACAA 173354 || ||||| Sbjct 4412 TAAAACAA 4405 >seq1842 Length=4307 Score = 96.9 bits (106), Expect = 8e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| |||||||| || || ||||| ||| ||| ||| || | || |||||| Sbjct 4224 GTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGACCAGCAGCGTCTGATCTTC 4165 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | || || || | || || ||| |||||| ||||||| |||||| Sbjct 4164 GCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGAGCGACTACAACATCCAGAAGGAGTCT 4105 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||| || || | ||||| Sbjct 4104 ACTCTTCACCTGGTGCTGCGTCTTCG 4079 >seq2906 Length=21328 Score = 84.2 bits (92), Expect = 5e-11 Identities = 148/215 (69%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| || ||| || || || || || || ||||| | || ||||| Sbjct 18461 AAAATG---CAGATTTTCGTCAAGACCCTTACGGGCAAGACCATCACGCTCGACGTGGAG 18405 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 || |||| | || || ||||| || ||||| || || || ||||| ||| Sbjct 18404 CCGTCGGACAGCATTGACAATGTCAAGCAGAAAATTCAGGACAAGGAGGGAATCCCGCCT 18345 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 ||| || | || ||||||||||| |||||| | || || || | ||| || | || Sbjct 18344 GACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTGTCGGAC 18285 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||| ||||||| ||||| || || ||||| || Sbjct 18284 TACAACATCCAGAAGGAGTCGACCCTGCACCTGGT 18250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181722543049369