Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1842 168 7e-37 seq2906 152 5e-32 seq3968 113 5e-20 seq2806 113 5e-20 seq4581 98.7 1e-15 >seq1842 Length=4307 Score = 168 bits (186), Expect = 7e-37 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| || || || ||||| || ||||||||||||| | |||| || Sbjct 4082 AGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGA 4141 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| ||||| || || |||| ||||||||| || ||||| |||||||| Sbjct 4142 CCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCC 4201 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || || || || ||| | | ||| |||| ||||||||||| ||| Sbjct 4202 TTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGGGTA 4261 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || || || ||||| || ||||| Sbjct 4262 ATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCAT 4299 >seq2906 Length=21328 Score = 152 bits (168), Expect = 5e-32 Identities = 171/224 (76%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| || || || ||||| || |||||||||| || || | ||| Sbjct 18241 AGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGT--CCGACAGAGTGC 18298 Query 134556 G--AGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTT 134613 | ||| |||||||| ||||| || || |||| ||||||||| || ||||| || || | Sbjct 18299 GGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCCT 18358 Query 134614 CTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATG-TGTCGGACGATTCCACGTCGAGA 134672 | || || |||||||| || ||||| || ||||| |||| |||| ||||||||||| Sbjct 18359 CCTTGTCCTGAATTTTCTGCTTGACATTGT-CAATGCTGTCCGACGGCTCCACGTCGAGC 18417 Query 134673 GTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || ||||| || || || | || || |||||||| |||||||| Sbjct 18418 GTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTT 18461 >seq3968 Length=9653 Score = 113 bits (124), Expect = 5e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||| || | || |||| ||| ||||| || || || ||||| || ||||||||||| Sbjct 9499 TTTCCGCCACGCAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCA 9558 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | | ||| | ||| || ||||| ||||| || || |||||||||||||| || ||| Sbjct 9559 CTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGC 9618 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGAC 134638 || |||||||| || || || || ||||| ||||| Sbjct 9619 GGGATGCCTTCCTTGTCCTGGATCTTTTGCTTGAC 9653 >seq2806 Length=38520 Score = 113 bits (124), Expect = 5e-20 Identities = 141/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || ||||||||||| | ||| | ||| |||||||| ||||| || || | Sbjct 7300 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 7359 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||| |||||||| || ||||| || || || || || || ||||| || ||||| || Sbjct 7360 TCAGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 7419 Query 134644 CCAATG-TGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACG 134702 ||||| |||| |||| ||||||||||| || ||||| || || || || || || || Sbjct 7420 -CAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACA 7478 Query 134703 AAAATTTGCAT 134713 || || ||||| Sbjct 7479 AAGATCTGCAT 7489 >seq4581 Length=10530 Score = 98.7 bits (108), Expect = 1e-15 Identities = 337/520 (65%), Gaps = 9/520 (2%) Strand=Plus/Plus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || || ||| | |||| || ||| | ||||| ||| ||||| | |||| || Sbjct 3925 CAGCAAATGATTCTGCGTGTAGCGTTAGGCATCCACAAGAGCGACATCAAGTCCGCACTG 3984 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || |||||| | | ||||| ||| || |||||||| | || || | || | Sbjct 3985 GAGACGTACGAGCTCATGTCGCAGAAGTTCTTCACGCACGCCACCCCTACTCTCTTCAAC 4044 Query 7684 GCGGGCACAAACGCG-CCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAG 7742 || ||||| | || ||||| ||||| || ||||| | | | |||| || ||| Sbjct 4045 GCCGGCACGC-CACGTCCTCAGTTGTCTTCTTGTTTCCTATTGGCTATGCAGGATGACTC 4103 Query 7743 CATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGG 7802 || || ||||||||| |||| || | |||||| ||| || |||| | ||||| Sbjct 4104 TATTGAGGGCATTTACGACACCCTAAAGCAATGCGCCTGTATCTCTAAATGGGCGGGCGG 4163 Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGG 7862 || ||| | | | || || | ||||||| ||| |||| ||| ||||| Sbjct 4164 TATCGGTATCAGTATGCACAACATCCGCGCCACTAACAGCTACATCCGCGGCACGAACGG 4223 Query 7863 AAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGA 7922 | | ||| | ||||||||||| ||||| || || ||| || |||| || Sbjct 4224 CTCCTCTAACGGCATTATCCCCATGTTGCGTGTGTTTAACGACACGGCTCGCTATGTGGA 4283 Query 7923 CCAGGGGGGA---AAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGA 7979 |||||| ||| |||||||| ||| | || ||||| ||||||||||||||||| || Sbjct 4284 CCAGGGCGGAGGTAAGCGCAAGGGCTCGTTCGCTATCTACTTGGAGCCGTGGCACGCCGA 4343 Query 7980 CATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCG--CGC 8037 | | | || | || |||||||| ||| ||| || | ||| ||| ||| Sbjct 4344 CGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACGGTAATGA--GCTGCACCGCGCCCGC 4401 Query 8038 GATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGA 8077 || | || | || |||||||||| ||||| || |||| Sbjct 4402 GACTTGTTTTACGCGCTGTGGGTGCCTGATCTCTTCATGA 4441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505357405872280