Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4581 163 4e-35 seq4510 114 2e-20 seq2791 89.7 6e-13 >seq4581 Length=10530 Score = 163 bits (180), Expect = 4e-35 Identities = 676/1047 (65%), Gaps = 31/1047 (3%) Strand=Plus/Minus Query 111051 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 111110 ||||||| ||||| || || || | |||||| || | || ||||| || ||||| || | Sbjct 4951 CATCCGCCAGACCCTGGACGCCAATACCAATGGGACGATGGCGCATGTTGGACTTGCGAG 4892 Query 111111 CAGTCT-CAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATC 111169 | ||| |||| |||||| | || ||| ||||| ||| || || || | | | Sbjct 4891 CC-TCTGCAACAGGATAATAGTTGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACC 4833 Query 111170 TTTGTGATTTCATGAAGTTTTTCATAATCAAA-AGTGCGAGTCTCTTCATTGACATACTT 111228 || | |||| ||| | | || || || | || | ||| ||| || | Sbjct 4832 TTGACCACCTCATACAGTCTCTTGTAGTCGAACACACCG----TTTTCC---ACAAACAT 4780 Query 111229 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 111288 || || || | || ||||| ||||| || ||| |||||| |||||||| | Sbjct 4779 AGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTGTACTCCAT 4720 Query 111289 AATTTCTGTACATAAGTTG---GAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTT 111345 | ||| ||||||||| |||| ||||| ||||| |||| || || ||| Sbjct 4719 GACTTCGCAGCATAAGTTGCTGGAACGG---ATCGTACCCAAGTTCTGCTGATTCGACTT 4663 Query 111346 CTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAG 111405 ||| || ||||||||||||||| ||||| |||||||| |||| | | || Sbjct 4662 GCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAG 4603 Query 111406 AATAGCCTTCCAAACATCGGCGGCTGGTACAATGGCGT--TGGCCCGTCCCTCCGCCTCG 111463 ||||| || ||| | || | || | || | | || ||||| ||| |||| Sbjct 4602 GATAGCGAACC--ACAGCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCTTCTCG 4545 Query 111464 TACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTT 111522 |||||| || || ||||||||||| || ||| | || ||| | ||||| || || | Sbjct 4544 TACTTTTCATACAGAGCTTCAAACTCATCGCCC-CAGCACTCGTACAGACCAGGAGCTTC 4486 Query 111523 GTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGG 111582 || |||||||| | | ||| | ||| |||| || | ||||||||| || || || Sbjct 4485 GTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAGG 4426 Query 111583 AATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTC 111641 | |||||| | |||| | || | | | | || | || | ||| ||||| | Sbjct 4425 CACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGC-TCATTACCGTGGTTCTTAC 4367 Query 111642 GTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATC 111701 | | || |||||||| | | || |||||||| ||||| | |||| |||| || | Sbjct 4366 GCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGC 4307 Query 111702 CCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 111758 |||| || || || | || | |||||||| || ||| ||||||| || || | || Sbjct 4306 CCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACA 4247 Query 111759 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTC 111817 | || ||||| || | || || || || || || || || | ||| |||| | Sbjct 4246 TGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGAT-GTAGCTGTTAGTGGCGCGG 4188 Query 111818 ACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 111877 | | || || || || ||||| || ||||| || ||||| || || | | | Sbjct 4187 ATGTTGTGCATACTGATACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGCTTT 4128 Query 111878 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 111937 || || | || || || | || ||||| |||| | || | ||||| ||| ||| Sbjct 4127 AGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAACAAGAAGAC 4068 Query 111938 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT 111997 | ||| || | ||| || || || |||||||| || || || ||||| |||| | || | Sbjct 4067 AACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGA-ACTT 4009 Query 111998 -TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGAT 112056 || ||||| ||||| ||||||| | || | ||||| | ||||||||| | Sbjct 4008 CTGCGACATGAGCTCGTACGTCTCCAGTGCGGACTTGATGTCGCTCTTGTGGATGCCTAA 3949 Query 112057 TGCGACCCGCATGAACATGTACTGTGG 112083 || || |||| | ||| | ||| || Sbjct 3948 CGCTACACGCAGAATCATTTGCTGCGG 3922 >seq4510 Length=93785 Score = 114 bits (126), Expect = 2e-20 Identities = 378/575 (66%), Gaps = 12/575 (2%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| || ||||||||||| || | || || | ||||| Sbjct 48345 TACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATCATGTCCATC 48286 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 122490 ||||||| || ||||| |||| | || | ||| |||| | ||| ||||| Sbjct 48285 CAGTCAAAAGGGTTCTTAGCGTGGTAGATCTTGGACACACCAAGCGAGTAGAGCAGACGG 48226 Query 122491 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTT-ACA 122549 || | ||| |||||||||||| | |||| ||||||||||||| || || | ||| Sbjct 48225 TCAGCCACGAACTCAATGTACTGGCACATGAGGGCAGAGTTCATACCAATCAGCTCCACA 48166 Query 122550 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 122609 ||||| | ||| | ||| | | ||||||| | || || || | ||| |||| Sbjct 48165 -GGGAGCGAGTCACGCACAAACTCGTGCTCAATCACCACAGCGTCACGAATGATCTCGTG 48107 Query 122610 GATA-GTTTCGGTAGTGGGTCTATTAC--GCAAAGTCTTGAAGAGCTCCACGGCAAACTC 122666 | | | || | | | | | || || | | || || || ||| || || Sbjct 48106 TACACGGCTCTCTGGCAGCTTGGTGACCAGCTTGGAGTACAAAAGG--CA-GGCGAAGTC 48050 Query 122667 CTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAG 122726 | ||| | ||||| || || || || || || ||||||| ||||| |||||||| Sbjct 48049 CGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCATGAG 47990 Query 122727 ACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 122786 || |||||||| | |||| | || | |||||| || || ||||||||||| || ||||| Sbjct 47989 GCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCTTCCAC 47930 Query 122787 ACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGAC-TTTGCATCAAACCATTTCA 122845 | || || || | ||||| || | | ||||| || || | || |||| || | Sbjct 47929 AGCAGCGAAAGCCAGCAGGCGCTCTGGGTAGGAG-GATACACGCGGGTCGCACCACTTGA 47871 Query 122846 TTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCT 122905 |||||| | ||||||||| | ||| || | || | ||||| | | || | Sbjct 47870 GTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGCAGGAGATGGT 47811 Query 122906 TCTTTTCAGATC-CATCCTTAATGTATTTGTCAAT 122939 ||| || |||| | ||||| ||||| ||||||| Sbjct 47810 CCTTCTC-GATCGCGTCCTTGATGTACGTGTCAAT 47777 >seq2791 Length=80716 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 182660 AAGCTGTGCCACCGAAGCGTCCCGAACATTCTTACATTTACCGCGAAGTGGGAACACACC 182719 ||||||||| |||| || || || ||||| | |||||| || || ||||| ||||| Sbjct 15544 AAGCTGTGCGACCGTGGCATCACGTACATTTAGAAGTTTACCACGCAGAGGGAAGACACC 15603 Query 182720 GTAGTGATCACGACCAACGACAGAGAGACCCGCAACCGCGAGGGTTTTCGCCGAATCACC 182779 ||| || || || |||||||| | || || || || || || | ||||| |||||||| Sbjct 15604 GTACTGGTCGCGTCCAACGACGGCCAGCCCAGCCACTGCAAGAGCCTTCGCTGAATCACC 15663 Query 182780 CTCCGTGACAAT 182791 |||||| | ||| Sbjct 15664 CTCCGTCAAAAT 15675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627981058754400