Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4581 248 1e-60 seq4510 167 3e-36 seq2791 95.1 1e-14 seq6011 82.4 9e-11 >seq4581 Length=10530 Score = 248 bits (274), Expect = 1e-60 Identities = 1088/1691 (64%), Gaps = 72/1691 (4%) Strand=Plus/Minus Query 117842 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 117901 ||||||||| || |||||||| |||| |||||| || || | ||||| || | || ||| Sbjct 5637 GTAGTACATGCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGTCAGCTT 5578 Query 117902 GGAGAGGGTTGGACTTTCCATGAAGAGGTTCAT------ACTTTGGGATTGATCGATGAA 117955 || || || | ||| || ||||| ||| ||| | ||| || || Sbjct 5577 ACTGATAGTCGGGTCGGCGATGTGGATGTTCAACGACTGACTCTGGCA--GAT--AT-AA 5523 Query 117956 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCT 118015 ||| || || || |||| || || | ||| ||||| |||||| |||||||| ||| | Sbjct 5522 GCG-CCACGGTCAGCCGACAGGTCCAGAACAGCCTTCTGCTTGATCTCCCACACCGTCTT 5464 Query 118016 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTT 118075 ||| | ||||| |||||| || || ||| || || || | || ||||| | || Sbjct 5463 GTACTTCTCCTTAACATCATCCGGAATGTCCTTGACCTTCTGCACCGAGCCACCATCATT 5404 Query 118076 GACCATGAGATCCTTCATA--TCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACG 118133 | || ||| | | || ||| | ||| | || | || | || |||| || Sbjct 5403 CAGAATCTGAT--TACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATC 5346 Query 118134 AGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTC 118193 |||| ||| || |||| |||||||| || | || | || || |||| | Sbjct 5345 AGATACTTGTTAACAATCGTGAACTCACCAGCCAACACACGACGGTTGTACATGTTGGAC 5286 Query 118194 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 118253 ||||| ||||| | |||| ||||| |||| ||| || || ||||||||||| |||||| Sbjct 5285 GTGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATG 5226 Query 118254 GGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATG-CGT--TCCTTGAGAGCG 118310 ||||| | || || |||||||||||| | || ||||| ||| || || || ||| Sbjct 5225 GGTGCAACCAGCAGCGAGTTACGGAGACCGTGTT---TAATGACGTCATCTTTTAGTGCG 5169 Query 118311 TCCCAGT-------CGTAGTTGA-GCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGA 118362 |||||| | || ||| | | || | |||| |||| || ||||||| || Sbjct 5168 GCCCAGTTCCAAAGCCCAGATGAAGGTGTGACGCCCC-----ACATGTCGAACTGGAAGA 5114 Query 118363 TACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGC--CAA 118420 |||| | || || || |||| || ||||| || || ||| | |||| ||| Sbjct 5113 TACCCTTACTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCC---AATTCCGTGGCAA 5057 Query 118421 TTCGGAGCT-CGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTG 118479 | | | || ||| | ||| || || || || || || ||| |||| | Sbjct 5056 TCTCCATCGACGTCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATT 4997 Query 118480 CCTTGGCCTCGTCGGAATCAAACGCG-AGTCGGCACAAA-ATAAATACATCCGCGAGACC 118537 | || | | || |||||| ||| || | || || ||||||| ||||| Sbjct 4996 CACGAGCTTGCGGGCTCTCGAACGCGTAGTT--CATGAGGATGAACGCATCCGCCAGACC 4939 Query 118538 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCA-CGG 118596 ||||| || | ||||| || ||||| | ||| || ||||| ||||| ||| || | | Sbjct 4938 CTGGACGCCAATACCAATGGGACGATGGCGCATGTTGGACTTGCGAGCC-TCTGCAACAG 4880 Query 118597 GATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCAT 118656 ||||| | || ||||| ||| | || || || |||| ||||| | |||| Sbjct 4879 GATAATAGTTGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTGACCACCTCAT 4820 Query 118657 GAAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 118715 || | | ||| || || || || | ||| ||| || |||| || || | Sbjct 4819 ACAGTCTCTTGTAGTCGAACACACCG----TTTTCC---ACAAACATAGGCAGCGCCACA 4767 Query 118716 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCAC 118775 ||||||| || ||||| | |||||| |||||||| || | ||| ||| Sbjct 4766 GACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTGTACTCCATGACTTCGCAGCAT 4707 Query 118776 AAGTTT---GAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 118832 ||||| |||| || || |||||||||| ||||| ||||| |||| || Sbjct 4706 AAGTTGCTGGAACGG---ATCGTACCCAAGTTCTGCTGATTCGACTTGCGGTTAGCTGCG 4650 Query 118833 TCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAG 118892 |||||||| |||||| | ||| |||||||| | || | | || ||||| ||| Sbjct 4649 TCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACCA- 4591 Query 118893 ACATCGGCAGCTGGCACAGTGGCGTTGGCTCGC--CCCTCTTCCTCGTACTTTGTGTAGA 118950 || | || | | | || | | || | | || || | |||||||||| || | Sbjct 4590 -CAGCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCTTCTCGTACTTTTCATACA 4532 Query 118951 GGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGA 119010 | ||||||||||| || ||| | ||| | || || || || | | || ||||| | Sbjct 4531 GAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAGGAGCTTCGTTGGGACAGAACA 4472 Query 119011 GAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG 119070 | ||| | ||| |||| || | |||||||||||| || || | ||| ||||| Sbjct 4471 AACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCGT 4412 Query 119071 AGAAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAG 119129 | || | || || ||| || || ||| || || || ||||| |||| || Sbjct 4411 AAAACAAGTCGCGGGCGCGGTGCAGCT-CATTACCGTGGTTCTTACGCAGATCCAGGAAC 4353 Query 119130 TCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGA 119186 || | | || ||||||||||| |||| ||| | |||| || ||||| || || Sbjct 4352 TCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCT 4293 Query 119187 CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCA 119246 || |||||| ||||| | || ||| ||||||| ||||| | ||| || || || || Sbjct 4292 CCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGGGATAATGCCG 4233 Query 119247 TCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGC 119306 | || ||| || || || || || ||| |||| | || | ||| || Sbjct 4232 TTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTG 4173 Query 119307 ATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATC 119366 ||||| ||||| || ||||| || ||||| ||||| | | | || || |||| || Sbjct 4172 ATACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTGTCGTAAATG 4113 Query 119367 CCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGT 119426 || || || |||||| ||| | || | ||||| || |||| ||||| | || Sbjct 4112 CCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAACAAGAAGACAACTGAGGACGTGGC 4053 Query 119427 GTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTC 119485 || || |||||||||||||| || || ||||| |||| | || | || ||||| || Sbjct 4052 GTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGA-ACTTCTGCGACATGAGCTC 3994 Query 119486 GTAGGTCTCCA 119496 ||| ||||||| Sbjct 3993 GTACGTCTCCA 3983 >seq4510 Length=93785 Score = 167 bits (184), Expect = 3e-36 Identities = 393/581 (68%), Gaps = 18/581 (3%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||| ||||| ||||| || | | ||| | ||||| Sbjct 48345 TACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATCATGTCCATC 48286 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 | ||||| |||||||| | || | || | ||| |||| | | ||| ||||| Sbjct 48285 CAGTCAAAAGGGTTCTTAGCGTGGTAGATCTTGGACACACCAAGCGAGTAGAGCAGACGG 48226 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT-ACA 129906 || | ||| |||||||||||| |||| | ||||||||||| || || | ||| Sbjct 48225 TCAGCCACGAACTCAATGTACTGGCACATGAGGGCAGAGTTCATACCAATCAGCTCCACA 48166 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||||| ||| | ||| | | |||||| ||||||| || || | ||| |||| Sbjct 48165 -GGGAGCGAGTCACGCACAAACTCGTGCTCAATCACCACAGCGTCACGAATGATCTCGTG 48107 Query 129967 AATG-GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCAC-----GGCAAA 130020 | | ||| || ||| | | | | || |||| |||| | | ||| || Sbjct 48106 TACACGGCTCTCTGGCAGCT---TGGTGACCAG-CTTG--GAGTACAAAAGGCAGGCGAA 48053 Query 130021 CTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 130080 ||| ||| | ||||||||||| |||||| || |||||||||| |||||| ||||| Sbjct 48052 GTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCAT 47993 Query 130081 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 130140 ||| || |||||||| | ||| || || | || || ||||| ||||||||||| || || Sbjct 47992 GAGGCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCTTC 47933 Query 130141 CACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGAC-TTTGTATCAAACCACT 130199 |||| ||||| || | || ||||| | ||||| | || | || |||||| Sbjct 47932 CACAGCAGCGAAAGCCAGCAGGCGCTCTGGGTAGGAG-GATACACGCGGGTCGCACCACT 47874 Query 130200 TCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTT 130259 | | ||||| || ||||| ||| || ||| |||| ||||| || || | ||| | Sbjct 47873 TGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGCAGGAGAT 47814 Query 130260 CCTTCTTTTCTGAT-GGATCTTTGATGTACTTATCTATGAG 130299 | ||| || ||| | || ||||||||| | || ||||| Sbjct 47813 GGTCCTTCTC-GATCGCGTCCTTGATGTACGTGTCAATGAG 47774 >seq2791 Length=80716 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 179935 GCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCA 179994 ||||| || |||||| | || ||||| |||||||| |||||||| || || || ||| Sbjct 15560 GCATCACGTACATTTAGAAGTTTACCACGCAGAGGGAAGACACCGTACTGGTCGCGTCCA 15619 Query 179995 ACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCA 180046 || || | || ||||| ||||| || | |||||| |||||||||||||||| Sbjct 15620 ACGACGGCCAGCCCAGCCACTGCAAGAGCCTTCGCTGAATCACCCTCCGTCA 15671 >seq6011 Length=24561 Score = 82.4 bits (90), Expect = 9e-11 Identities = 238/363 (66%), Gaps = 10/363 (3%) Strand=Plus/Plus Query 178883 AACCCGTGCCGATGCCTTCGGTTCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 178942 ||||||| ||||| || || | ||||||||||| ||||| || | |||| || || Sbjct 13431 AACCCGTTCCGATACCGTCACTGCCGTTCACGAGCACCATGGGGATAATTGGGATGTACC 13490 Query 178943 AGTCTGGTTCAATCGCACGCCCGTCATCATCCAAATAATTGAGCACGGGGTCGTCCCTCG 179002 | || || || || | | ||||| |||| || ||| || || | || |||| | Sbjct 13491 ATTCCGGCTCGATGGACTGGCCGTCTTCATTCAGATACTTCAGACAGTCGTTGTCCAAAG 13550 Query 179003 GATCAAAGATTTTACGAGCATCCCTGGT-GAGTTTTGTGAAGATGTACCTCGTTTGAGAC 179061 |||| |||| |||| | ||| | || || ||||| || || | | | | Sbjct 13551 GATCGTAGATACGGCGAGTA-AGCTGCTCTAGGTTGGTGAAAATATAACGAGCACTGGCC 13609 Query 179062 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATA 179121 | ||||| |||||||| |||||||| || || |||||| || || || | ||| Sbjct 13610 GAGTCTTTACCACCCATCAGACGCGTACCGAACTGACCAATCGGGGACAGTAGGTGGATG 13669 Query 179122 TTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACT--- 179178 ||||| || | | |||| | |||| || || || | || | ||||| Sbjct 13670 TTGTTGCTGCCAACGAAGTCCTGCGCCATATTCACGAT----ACAGCCCTGTAGACTTTG 13725 Query 179179 -TCACCGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCAT 179237 |||||||||||||| || || | || | ||| || | |||||||| |||||||| | Sbjct 13726 CTCACCGTGATGGTAGGCAGAGTGCTCAGACACGTAGCCAGCCAACTGTGCCACCTTGAG 13785 Query 179238 CTC 179240 ||| Sbjct 13786 CTC 13788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618385037174840