Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq4581 228 9e-55 seq4510 111 2e-19 seq2791 104 3e-17 seq1640 100 3e-16 >seq4581 Length=10530 Score = 228 bits (252), Expect = 9e-55 Identities = 1076/1677 (64%), Gaps = 44/1677 (3%) Strand=Plus/Plus Query 104283 TGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 ||||||| ||||| ||||| || | || | |||| ||||| || || || |||||| Sbjct 3983 TGGAGACGTACGAGCTCATGTCGCAGAAGT-TCTTCACGCACGCCACCCCTACTCTCTTC 4041 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || || || || ||| | || || |||| ||| ||||| | || | |||| ||| Sbjct 4042 AACGCCGGCACGCCACGTCCTCAGTTGTCTTCTTGTTTCCTATTGGCTATGCAGGATGAC 4101 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || || | || || || | || || | | | || || ||||| || ||||| || Sbjct 4102 TCTATTGAGGGCATTTACGACACCCTAAAGCAATGCGCCTGTATCTCTAAATGGGCGGGC 4161 Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAAA 104520 ||||| || || || || | | | |||| ||| | || || || || || || Sbjct 4162 GGTATCGGTATCAGTATGCACAACATCCGCGCCACTAACAGCTAC-ATCCGCGGCACGAA 4220 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 || || | || ||||| || ||| | || || ||||||| ||| || |||||||| Sbjct 4221 CGGCTCCTCTAACGGCATTATCCCCATGTTGCGTGTGTTTAACGACACGGCTCGCTATGT 4280 Query 104581 AAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGC 104637 | || | || || || ||||| || |||| |||| | ||||| |||||||| Sbjct 4281 GGACCAGGGCGGAGGTAAGCGCAAGGGCTCGTTCGCTATCTACTTGGAGCCGTGGCACGC 4340 Query 104638 GGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCG 104697 || | | |||||||| || ||||| ||||| ||| | ||| | || ||| Sbjct 4341 CGACGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACGGTAATGAGCTGCACCGCGCCCG 4400 Query 104698 CGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGG 104757 ||| | || | ||| || ||| | || |||||||||||||||||||| |||| | ||| Sbjct 4401 CGACTTGTTTTACGCGCTGTGGGTGCCTGATCTCTTCATGAAGAGAGTGGAGGCCAATGG 4460 Query 104758 CAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGAGG 104816 ||| ||| | | || ||||| || | || |||||||| | ||| ||| | ||| || | Sbjct 4461 CAAGTGGAGTTTGTTCTGTCCCAACGAAGCTCCTGGTCTGTACGAGTGCTG-GGGCGATG 4519 Query 104817 AGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAG 104876 |||||||||| || || |||||||||| | ||||| || ||| | ||| | | Sbjct 4520 AGTTTGAAGCTCTGTATGAAAAGTACGAGAAGGAAGGACGTGCGCGTAAGACAATCAACG 4579 Query 104877 CTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGC 104936 || | ||||| ||||| || | |||| | ||||| || || | ||||| Sbjct 4580 CTCAGCAGCTGTGGTTCGCTATCCTAGACGCTCAGATTGAGACGGGAGTGCCCTTCATGC 4639 Query 104937 TTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTT 104996 | ||||| ||||| ||||| ||| ||||| |||| |||||| |||| ||| Sbjct 4640 TCTACAAGGACGCAGCTAACCGCAAGTCGAATCAGCAGAACTTGGGTACGATC---CGTT 4696 Query 104997 C---CAATCTCTGTACAGAAATCTTGGAATTTACAGACA-AAGATGAGACGGCTGTGTGT 105052 | ||| | || ||| || |||| | || | || |||||| ||| ||||| Sbjct 4697 CCAGCAACTTATGCTGCGAAGTCATGGAGTACAC-GTCACCCGATGAGGTGGCAGTGTGC 4755 Query 105053 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTAT 105112 ||| | || || | || || || | || |||||| | || | || || || Sbjct 4756 AACTTGGCGTCTGTGGCGCTGCCTATGTTTGTGGA-----AAACGGTG-TGTTCGACTAC 4809 Query 105113 GAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGA 105172 | | ||| | || || || |||| ||||| |||| || || || Sbjct 4810 AAGAGACTGTATGAGGTGGTCAAGGTGATCACGCGCAACCTCAACAAGGTCATCGACGTC 4869 Query 105173 AATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCT 105231 || | ||| || |||| ||| ||||| || || || ||| | || ||||| |||||| | Sbjct 4870 AACTATTATCCTGTTGCAGA-GGCTCGCAAGTCCAACATGCGCCATCGTCCCATTGGTAT 4928 Query 105232 CGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGA 105291 || || |||||||| ||||||| ||||| || | |||| || || | | Sbjct 4929 TGGCGTCCAGGGTCTGGCGGATGCGTTCATCCTCATGAACTACGCGTTCGAGAGCCCGCA 4988 Query 105292 AGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAG 105351 ||| ||| | || | ||| || ||||| || || || || | ||| || Sbjct 4989 AGCTCGTGAATTGAACAAGAACATCTTCGAGACGATCTACTTTGCTGCCATGGAGACGTC 5048 Query 105352 TTCAGAG-TTGGCA-GAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA 105409 ||| ||| || | ||| ||||| || || || || |||| ||||| || || Sbjct 5049 GATGGAGATTGCCACGGAATTG--GGTCCTTACGAGACGTTCCAGGGCTCTCCGGC--CA 5104 Query 105410 -CAAGGGGTGCTT-CAATTTGATATGTGGGAAGGTGAGACC--AAGCTTCACTACG--AC 105463 ||||| ||| || || || ||||||| || | ||| | || || | || Sbjct 5105 GTAAGGGTATCTTCCAGTTCGACATGTGGG-GCGTCACACCTTCATCTGGGCTTTGGAAC 5163 Query 105464 TGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCT 105523 |||| || || || || | ||| | | ||||| |||||| || || | || Sbjct 5164 TGGGCCGCACTAAAAGATGACGTCATTAAACACGGTCTCCGTAACTCGCTGCTGGTTGCA 5223 Query 105524 CCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTAC 105583 || ||||| ||||||||||| || || ||| |||| || || || | | || || ||| Sbjct 5224 CCCATGCCGACAGCCTCCACGGCTCAGATCCTGGGCAACAACGAGTCTATCGAGCCTTAC 5283 Query 105584 ACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCAT 105643 ||| | ||||| || | | | || || ||||| |||||| |||||| || Sbjct 5284 ACGTCCAACATGTACAACCGTCGTGTGTTGGCTGGTGAGTTCACGATTGTTAACAAGTAT 5343 Query 105644 CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGA--TATGAAGGATCTCATGG 105701 || || | || || | ||| | || | ||| | ||| || | | ||| || Sbjct 5344 CTGATGAAGGAGCTTATCGAGCTCGGCATTTGGACGCCGGAAGTACGTA--ATCAGATTC 5401 Query 105702 TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGT 105761 |||| | ||||| || | || || | ||| ||||| |||| ||||| || || Sbjct 5402 TGAATGATGGTGGCTCGGTGCAGAAGGTCAAGGACATTCCGGATGATGTTAAGGAGAAGT 5461 Query 105762 ACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTC 105821 || || || ||||| |||||| ||||| ||| | ||| || | || || ||||| | Sbjct 5462 ACAAGACGGTGTGGGAGATCAAGCAGAAGGCTGTTCTGGACCTGTCGGCTGACCGTGG-C 5520 Query 105822 GCTT-CATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAACGATGTCCAAG 105880 |||| || || ||||| |||| || ||| | || || || ||| Sbjct 5521 GCTTATATCTGCCAGAGTCAGTCGTTGAACATCCACATCGCCGACCCGACTATCAGTAAG 5580 Query 105881 CTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTAC 105937 || | || |||||| | ||| |||||||||||| ||||| || || ||||| ||| Sbjct 5581 CTGACGTCCATGCACTTTTACGCTTGGAAGAAGGGACTCAAGACCGGCATGTACTAC 5637 >seq4510 Length=93785 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863 ||||| || | || || || ||| || || ||||||||||| || || |||||| | Sbjct 47906 GAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGGCATCTTCTTCTCGGGCTCTTTCTGCTCC 47965 Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 || | |||||| |||||||| || |||||||| ||||| ||||||| |||||||| ||| Sbjct 47966 ATCTTTTGGCTAAAGAAGCGCGGCCTCATGCCCGGTCTGAGCTTCTCGAACGAGCTCATC 48025 Query 94924 TCTCGTGACGAGGG 94937 |||||||||||| Sbjct 48026 AGTCGTGACGAGGG 48039 >seq2791 Length=80716 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 169313 AGCTGTGTGACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCG 169372 ||||||| ||| | |||||| || ||||| | || ||||| ||||||||||||||| Sbjct 15545 AGCTGTGCGACCGTGGCATCACGTACATTTAGAAGTTTACCACGCAGAGGGAAGACACCG 15604 Query 169373 TAGTGATCACGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCC 169432 || || || || |||||||||| || || || ||||| |||| |||||| || |||||| Sbjct 15605 TACTGGTCGCGTCCAACGACGGCCAGCCCAGCCACTGCAAGAGCCTTCGCTGAATCACCC 15664 Query 169433 TCGGT 169437 || || Sbjct 15665 TCCGT 15669 >seq1640 Length=29134 Score = 100 bits (110), Expect = 3e-16 Identities = 137/188 (73%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAG--CGACTTCAAAGA 9761 || ||||||||||| ||||||| |||||| ||| | || ||| | ||||| | |||| Sbjct 23166 GCGTCAATCTCATCGATGAAGATGATGCACGGT-GCCTTCCGCTTGGCCGACT-CGAAGA 23223 Query 9762 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9821 | || || || || |||||||||||| || ||||||| | || | || | ||| Sbjct 23224 GGTCACGCACGCGACGGGCGCCCACACCTACGTACATCTCTTCGAACTCTGATCCAGAAG 23283 Query 9822 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 | | || ||| ||||| || ||||| || || || || ||||| || |||||||||| Sbjct 23284 AATAGAAGAACGGGACGCCAGCCTCACCAGCGATAGCACGAGCGAGTAGCGTCTTACCCG 23343 Query 9882 TACCTGGC 9889 |||| ||| Sbjct 23344 TACCAGGC 23351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583213490258360