Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1842 129 2e-24 seq750 120 9e-22 seq2906 116 1e-20 seq4897 89.7 2e-12 >seq1842 Length=4307 Score = 129 bits (142), Expect = 2e-24 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 140502 TTTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTA 140561 ||||| ||||||| || | | || || || |||||||||||||| || || || || Sbjct 4064 TTTTAGTTACCACCGCGAAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTG 4123 Query 140562 TAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGA 140621 || || | || || || || || || || || ||||| ||||| ||||| ||||| Sbjct 4124 TAGTCGCTCAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGG 4183 Query 140622 TCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGAT 140681 ||||| ||||| ||||| || |||||||| || || || || || ||||| || || Sbjct 4184 TCAGGCGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGAC 4243 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || |||| ||||| ||||| | || || || || |||||||| Sbjct 4244 GGCTCCACGTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCAT 4299 >seq750 Length=15118 Score = 120 bits (132), Expect = 9e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 130719 TCATCATGTGCAGCTAACATTCCTCCAAGCATAACAAAATCAGCTCCTGCTCCAAATGCT 130778 |||||||| |||| | ||| || |||||||| ||||| || ||||| || || || || Sbjct 1156 TCATCATGACCAGCAAGCATCCCACCAAGCATGACAAAGTCTGCTCCAGCCCCGAACGCC 1215 Query 130779 TTCGCAATATCCCCGGGAGATTTACAACCCCCATCAGCAATAACATGTCCATTTAATCCA 130838 || |||| || || ||| || | || || || |||| || || || || || | || Sbjct 1216 TTAGCAACGTCACCAGGACATGTGCAGCCTCCGTCAGAGATCACGTGGCCGTTGAGACCG 1275 Query 130839 TGTGCCGCATCAGCACACTCTGAAATAGCAGAAAGTTGTGGATATCCAACTCCAGTTACT 130898 || || |||||||||||||| | |||||| | || ||||| || ||||||||| | Sbjct 1276 TGAGCGGCATCAGCACACTCCAGCACAGCAGACAACTGCGGATAACCCACTCCAGTTTGT 1335 Query 130899 TTTCTTGTAGTACAAACAGCACCTGGACCAATACCAATTTTAACAATATCAGCTCC 130954 || | || || || |||| |||||||| || || | || | || || ||||| Sbjct 1336 TTACGAGTGGTGCACACAGAGCCTGGACCGATGCCGACCTTGATGATGTCGGCTCC 1391 >seq2906 Length=21328 Score = 116 bits (128), Expect = 1e-20 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || || || || ||||| || || || || || || || Sbjct 18231 ACCACCACGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 18290 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || || || || || || || || || ||||| ||||| ||||| ||||| || Sbjct 18291 CAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 18350 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||||| || || ||||||||||| || ||||| ||||| || || || || || Sbjct 18351 GATTCCCTCCTTGTCCTGAATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCAC 18410 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || | ||||| || || || || || || |||||||||||| Sbjct 18411 GTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATT 18459 >seq4897 Length=5832 Score = 89.7 bits (98), Expect = 2e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 5252 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTAGACCGC 5311 Query 74548 TCGGGCA 74554 ||||||| Sbjct 5312 TCGGGCA 5318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515128421275667