Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4581 241 1e-58 seq2791 114 1e-20 seq6011 100 3e-16 seq4683 95.1 1e-14 >seq4581 Length=10530 Score = 241 bits (266), Expect = 1e-58 Identities = 340/472 (72%), Gaps = 8/472 (2%) Strand=Plus/Plus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||||||||| | ||| || |||| ||| ||||||||||| || || || |||||| Sbjct 3985 GAGACGTACGAGCTCATGTCGCAGAAGTTCTTCACGCACGCCACCCCTACTCTCTTCAAC 4044 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 || || ||| | |||||| |||| || ||||| |||| ||| |||||||||| Sbjct 4045 GCCGGCACGCCACGTCCTCAGTTGTCTTCTTGTTTCCTATTGGCTATGCAGGATGACTCT 4104 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 || || ||||| ||||| || || ||| | || ||| ||||| || ||| |||| ||| Sbjct 4105 ATTGAGGGCATTTACGACACCCTAAAGCAATGCGCCTGTATCTCTAAATGGGCGGGCGGT 4164 Query 53423 ATCGGTATCCAC-TGCTCGAACGTCCGTGCGA---ACGGCACACCAATCAAGGGGACGAA 53478 ||||||||| ||| | ||| |||| || | || || || ||| || ||||| Sbjct 4165 ATCGGTATCAGTATGCAC-AACATCCGCGCCACTAACAGCT-AC--ATCCGCGGCACGAA 4220 Query 53479 CGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGT 53538 |||| | | | || || | || ||| | || || || ||| ||||||| || || || Sbjct 4221 CGGCTCCTCTAACGGCATTATCCCCATGTTGCGTGTGTTTAACGACACGGCTCGCTATGT 4280 Query 53539 CAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGC 53598 ||||||| || || ||||||||||| |||||||| |||||| | |||||||||||||| Sbjct 4281 GGACCAGGGCGGAGGTAAGCGCAAGGGCTCGTTCGCTATCTACTTGGAGCCGTGGCACGC 4340 Query 53599 CGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCG 53658 |||| | | ||||| || || |||||| ||| || ||| | || | ||| ||| Sbjct 4341 CGACGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACGGTAATGAGCTGCACCGCGCCCG 4400 Query 53659 TGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAG 53710 ||| ||||| || |||||| | || || ||||||||| | | |||||| Sbjct 4401 CGACTTGTTTTACGCGCTGTGGGTGCCTGATCTCTTCATGAAGAGAGTGGAG 4452 Score = 165 bits (182), Expect = 9e-36 Identities = 531/811 (65%), Gaps = 31/811 (4%) Strand=Plus/Plus Query 55133 ACTCGGAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAG 55192 || || ||||| ||| |||||||||| || || || || || || ||| |||||| Sbjct 4840 ACGCGCAACCTCAACAAGGTCATCGACGTCAACTATTATCCTGTTGCAGAGGCTCGCAAG 4899 Query 55193 TCCAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATG 55252 |||||| | || || || ||||| | || || || ||||| |||| || ||||| Sbjct 4900 TCCAACATGCGCCATCGTCCCATTGGTATTGGCGTCCAGGGTCTGGCGGATGCGTTCATC 4959 Query 55253 ATGCTCGGATTGCCC-TTCGA---CTCGGAACCTGCTCGAGAAATTAACCAGGACATCTT 55308 | | | | | | | ||||| | || || ||||| ||| | ||| || ||||||| Sbjct 4960 CTCAT-GAACTACGCGTTCGAGAGCCCGCAA---GCTCGTGAATTGAACAAGAACATCTT 5015 Query 55309 C-AGTCGCATCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCTATGAGCGAGGGGA 55367 | || || ||||||||||| || | ||| |||| | | || | | ||| Sbjct 5016 CGAGACG-ATCTACTTTGCTGCCATGGAGACGTCGATGGAGATTGCCACGGAATTGGGTC 5074 Query 55368 CCTACGAGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGGG 55427 | ||||||||||||| | || || || ||||| | |||||||||| | |||| Sbjct 5075 CTTACGAGACGTTCCAGGGCTCTCCGGCCAGTAAGGGTATCTTCCAGTTCGACATGTGGG 5134 Query 55428 GCAAGTCTGACCC-CATGT-----TTG--ACAAGT------TGAAGCATGACATTCACTT 55473 || ||| ||| ||| | ||| || | | || ||||| | || | Sbjct 5135 GC--GTCACACCTTCATCTGGGCTTTGGAACTGGGCCGCACTAAAAGATGACGT-CATTA 5191 Query 55474 GTGG-GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGA 55532 || || || ||||| ||||| || || || ||||| || || || |||||||||| Sbjct 5192 AACACGGTCTCCGTAACTCGCTGCTGGTTGCACCCATGCCGACAGCCTCCACGGCTCAGA 5251 Query 55533 TCATGGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCC 55592 || |||||||||||||| | ||||||| |||||| ||||||| ||| || || Sbjct 5252 TCCTGGGCAACAACGAGTCTATCGAGCCTTACACGTCCAACATGTACAACCGTCGTGTGT 5311 Query 55593 TAGCAGGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACA 55652 | || |||||||| || | |||||| | || | ||||| || || || || Sbjct 5312 TGGCTGGTGAGTTCACGATTGTTAACAAGTATCTGATGAAGGAGCTTATCGAGCTCGGCA 5371 Query 55653 AGTGGAACCCGCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCT-- 55710 |||| ||| | | | | ||| || | || || || || ||||| | Sbjct 5372 TTTGGACGCCGGAAGTACGTAATCAGATTCTGAATGATGGTGGCTCGGTGCAGAAGGTCA 5431 Query 55711 -GGAGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGA 55769 ||| ||||| | | ||||||| ||| ||||||||||||||| |||||| Sbjct 5432 AGGACATTCCGGATGATGTTAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGAAGG 5491 Query 55770 GTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACA 55829 | | | ||| || ||||| ||||| || || ||| |||| ||||| |||||| Sbjct 5492 CTGTTCTGGACCTGTCGGCTGACCGTGGCGCTTATATCTGCCAGAGTCAGTCGTTGAACA 5551 Query 55830 TCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGA 55889 || ||| | | || | | ||| ||| || ||||||||||||| ||||||| Sbjct 5552 TCCACATCGCCGACCCGACTATCAGTAAGCTGACGTCCATGCACTTTTACGCTTGGAAGA 5611 Query 55890 AGGGACTCAAGACGGGTATGTACTATCTGCG 55920 ||||||||||||| || |||||||| |||| Sbjct 5612 AGGGACTCAAGACCGGCATGTACTACATGCG 5642 >seq2791 Length=80716 Score = 114 bits (126), Expect = 1e-20 Identities = 189/273 (69%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 152028 CGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG 152087 ||||||||| ||||| | || || || ||||| |||||| ||| || || ||||| || Sbjct 14620 CGTGAAGATATATCGAGGACTAGCAGCGTCCTTACCACCTTGCAGTCGAGTACCAAATTG 14679 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 || || || | || || ||||| |||| |||||||| | ||| |||| || || Sbjct 14680 ACCTGACGGGTACAGTAGCGGCAGGTTATTGGACCCCACGAAGTCCTGCGCCATGTTGAC 14739 Query 152148 AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207 |||||| || | ||||| ||||||||||| || || ||||| | ||| || Sbjct 14740 AATCGTCGAGTGTAACGAGGCTTCTCCGTGGTGATAAGCTGTGTGCTCACTGCAGTAACC 14799 Query 152208 CGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCAC 152267 |||| ||| |||||||||| || |||| || || || | ||| ||| | | || Sbjct 14800 AGCCAGCTGAGCCACCTTCACTTCACTCGTAAGCTTGCGTTTTAAACAAGCGAACAGAAC 14859 Query 152268 CTTGCGCTGGGATGGTTTCAAACCGTCCACCAC 152300 ||| ||||| || || | ||| || ||||| Sbjct 14860 CTTCCGCTGCGAGATCTTGAGACCATCGACCAC 14892 Score = 102 bits (112), Expect = 9e-17 Identities = 147/204 (72%), Gaps = 10/204 (5%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| || || |||| || ||||| ||||| ||||| || || ||||| ||||| Sbjct 14621 GTGAAGATATATCGAGGACTAGCAGCGTCCTTACCACCTTGCAGTCGAGTACCAAATTGA 14680 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || ||| | || || |||||| |||| ||||| |||| || |||| ||||||| Sbjct 14681 CCTGACGGGTACAGTAGCGGCAGGTTATTGGACCCCACGAAGTCCTGCGCCATGTTGACA 14740 Query 117425 ATCGTACCTTG----GAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTC-CGCCACGT 117479 ||||| || |||||| || || |||||||| || || ||||| | || || Sbjct 14741 ATCGTCGAGTGTAACGAGGCT----TCTCCGTGGTGATAAGCTGTGTGCTCACTGCA-GT 14795 Query 117480 AGCCCGCCAGCTGAGCCACCTTCA 117503 | || ||||||||||||||||||| Sbjct 14796 AACCAGCCAGCTGAGCCACCTTCA 14819 >seq6011 Length=24561 Score = 100 bits (110), Expect = 3e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 117297 CTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTAC 117356 ||||| |||||||| ||||||| || || | || || ||||| |||||||||| Sbjct 13578 CTAGGTTGGTGAAAATATAACGAGCACTGGCCGAGTCTTTACCACCCATCAGACGCGTAC 13637 Query 117357 CGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCA 117416 |||| || ||| |||| || |||| | ||||||| ||| || |||| || |||| Sbjct 13638 CGAACTGACCAATCGGGGACAGTAGGTGGATGTTGTTGCTGCCAACGAAGTCCTGCGCCA 13697 Query 117417 AGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCA 117476 || || || || || || || |||||| || || || || | ||||| | || Sbjct 13698 TATTCACGATACAGCCCTGTAGACTTTGCTCACCGTGATGGTAGGCAGAGTGCTCAGACA 13757 Query 117477 CGTAGCCCGCCAGCTGAGCCACCTT 117501 ||||||| |||| ||| |||||||| Sbjct 13758 CGTAGCCAGCCAACTGTGCCACCTT 13782 >seq4683 Length=11278 Score = 95.1 bits (104), Expect = 1e-14 Identities = 247/369 (67%), Gaps = 17/369 (5%) Strand=Plus/Minus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 ||| | ||| | ||||||||| | || || ||| || ||| ||| ||||||||| || Sbjct 5151 CGCGAGCTCTACAAACTCACGCACACTATGACACTCTCCAGTGGCAACCACGAAATCCTC 5092 Query 124541 GGGAATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCA 124600 |||| | ||||| | ||| ||||||| || |||||||| ||||| ||||| Sbjct 5091 GGGAGTGTCGTGCTGTAGCATTCGCCACATACATTCCACGTAGTCTCGAGCGTGGCCCCA 5032 Query 124601 GTCGCGCTTGGCATCCAGGTTTCCGAGCTCGATTGGCTTGGCCGTCTTG-TTCC------ 124653 |||||||| ||| || ||||| || | | | ||| || ||| | |||| Sbjct 5031 GTCGCGCTGGGCGTCGAGGTTGCCTA--TAAACAGGC--AGC--TCTCGATTCCAGCGTG 4978 Query 124654 ACTCCG--CCAAACCCAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGA 124711 | | || ||| | | || || || ||||| ||||| | |||||||| | Sbjct 4977 AATACGCACCACGGCTCGAGTGATTTTACGCGTGACAAAAGTTGGTCCGCGTCGAGGACT 4918 Query 124712 CTCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTT 124771 |||||||||||| ||||| || || || |||| || || | ||||| | | || Sbjct 4917 CTCGTGGTTGAATAGAATCCCGTTAACGGCGTACATACCATAAGCTTCGCGAT-GGTTAA 4859 Query 124772 CGTCA-TCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGG 124830 | || ||||||| |||| |||| | ||| |||||||| || || | |||||| | Sbjct 4858 CTACACTCCAATAGGCAAATTGCTTTGCCACCCCATAGGGTGAACGTGGATGGAATGGTG 4799 Query 124831 TGTTTTCAT 124839 |||| |||| Sbjct 4798 TGTTCTCAT 4790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547171613942200