Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4581 289 3e-73 seq1842 170 2e-37 seq2906 163 3e-35 seq4510 143 3e-29 seq2806 127 2e-24 seq2791 118 1e-21 seq3968 89.7 6e-13 >seq4581 Length=10530 Score = 289 bits (320), Expect = 3e-73 Identities = 1063/1645 (65%), Gaps = 46/1645 (3%) Strand=Plus/Minus Query 80041 CGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTG 80100 |||| ||||||||||| |||||||| ||||||||||| |||| | |||||| || | Sbjct 5642 CGCATGTAGTACATGCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGTC 5583 Query 80101 AGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAAA 80160 ||||| | || |||| | ||| |||||||| |||||| ||| ||||| || Sbjct 5582 AGCTTACTGATAGTCGGGTCGGCGATGTGGATGTTCAACGACTGACTCTGGCAGATATAA 5523 Query 80161 GCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTACGA 80220 || ||||| || |||| || || | || | ||| || || ||||| || || Sbjct 5522 GCGCCACGGTCAGCCGACAGGTCCAGAACAGCCTTCTGCTTGATCTCCCACACCGTCTTG 5463 Query 80221 TACACCTTACGAAGCTCCTCTGGAATGTCCA-GA--TTTTGCACACTGCCACCGTCCTTT 80277 ||| || || || || ||||||||| || || ||||| |||||| || || Sbjct 5462 TACTTCTCCTTAACATCATCCGGAATGTCCTTGACCTTCTGCACCGAGCCACCATCATTC 5403 Query 80278 ACAATTTGATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGATCTTTCACAAGG 80337 | ||| ||||| | ||| | |||||| | || |||| | || || |||| || Sbjct 5402 AGAATCTGATTACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATCAGA 5343 Query 80338 TGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTG 80397 | |||||||| || ||||| || || | ||||| |||| ||| | ||| Sbjct 5342 TACTTGTTAACAATCGTGAACTCACCAGCCAACACACGACGGTTGTACATGTTGGACGTG 5283 Query 80398 TAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGG 80457 |||||||| | | ||||||||| || ||||||||||||||| || |||||||| || Sbjct 5282 TAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATGGGT 5223 Query 80458 CCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGACCAA 80517 | |||| ||| || || || || ||||| || ||| || || | | | ||| Sbjct 5222 GCAACCAGCAGCGAGTTACGGAGACCGTGTTTAATGACGTCATCTTTTAGTGCGGCCCAG 5163 Query 80518 AAATCAACCCCA----ACGCTGTGA--CCCCACATGTCGTGCTGCAAGATGCCCTCCGAC 80571 || |||| | | ||||| |||||||||||| ||| ||||| |||| Sbjct 5162 TTCCAAAGCCCAGATGAAGGTGTGACGCCCCACATGTCGAACTGGAAGATACCCTTACTG 5103 Query 80572 GCCGGAGACCCCGCGAACGTCTCGTACGGGCCC---TCCGTCTTGGCCAGCTC---ACAC 80625 |||||||| ||| |||||||||||| || ||| |||| |||| | ||| || Sbjct 5102 GCCGGAGAGCCCTGGAACGTCTCGTAAGGACCCAATTCCG---TGGCAATCTCCATCGAC 5046 Query 80626 GACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCC 80685 | |||||| ||| || || || ||| |||| | |||||||| | || || Sbjct 5045 GTCTCCAT---GGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCT 4989 Query 80686 TGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCG 80745 || ||| ||||||| || ||| | |||||| | || ||||| ||||| ||||| Sbjct 4988 TGCGGGCTCTCGAACGCGTAGTTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCA 4929 Query 80746 ATGGCGATCGGGCGGTGGCGCTTGTTCGA-TCGCTCGGCCTCCGGAATTGGGTAAAAGTT 80804 || | || || || |||||| |||| || | || ||||| | || || ||| |||| Sbjct 4928 ATACCAATGGGACGATGGCGCATGTTGGACTTGC-GAGCCTCTGCAACAGGATAATAGTT 4870 Query 80805 ATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTG 80864 |||||||| ||| |||||||| || | ||| || |||| ||| ||| Sbjct 4869 GACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTT 4810 Query 80865 AAAGTCGAATTGGTTCCCCTT--CACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCAC 80922 ||||||| || || |||||| || || || ||||||| |||||| Sbjct 4809 GTAGTCGAA--CACACCGTTTTCCACAAACATAGGCAGCGCCACAGACGCCAAGTTGCAC 4752 Query 80923 ACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTA 80982 || |||||||| || | || |||| | || ||| ||| || || || Sbjct 4751 ACTGCCACCTCATCGGGTGACGTGTACTCCATGACTTCGCAGCATAAGTTGCTGGAACGG 4692 Query 80983 ATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTAC 81042 || ||||||| ||| | ||| || |||||| ||| |||||||||||| |||| | Sbjct 4691 ATCGTACCCAAGTTCTGCTGATTCGACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAG 4632 Query 81043 GGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACC 81102 || || ||||| | ||| | | ||||| ||| ||| | || | || |||| Sbjct 4631 GGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACCACAGCTGCTGAGCGTTGATT 4572 Query 81103 ACCTTGCG-GAATTTGCCTTCGGCCACATACTTGGCGTA---AGCTTCGTCGAACT--TG 81156 ||| || | | | ||||| | | ||||| | || |||| || |||| | Sbjct 4571 GTCTTACGCGCACGT-CCTTCCTTCTCGTACTTTTCATACAGAGCT---TCAAACTCATC 4516 Query 81157 GCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTG 81216 || || | || || | || ||||| || || | || ||| | | Sbjct 4515 GCCCCAGCA--CTCGTACAGACCAGGAGCTTCGTTGGGACAGAACAAACTCCACTTGCCA 4458 Query 81217 TCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGG 81276 | | ||| || ||||||||| ||||| | ||| || ||| |||| ||||||| Sbjct 4457 TTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCGTAAAACAAGTCGCGG 4398 Query 81277 CAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCA 81336 ||| | ||||| ||| ||||| |||| || || || || | | ||| || Sbjct 4397 GCGCGGTGCAGCTCATTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACACGTCGGCG 4338 Query 81337 TGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCACCCTGGTTGACG 81393 ||||| ||||||| || | |||| ||| |||||||| || || ||||||| || Sbjct 4337 TGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCTCCGCCCTGGTCCACA 4278 Query 81394 TAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTC 81453 || || || || ||||||| ||||||||||| ||||| || || | || |||||| Sbjct 4277 TAGCGAGCCGTGTCGTTAAACACACGCAACATGGGGATAATGCCGTTAGAGGAGCCGTTC 4218 Query 81454 GTACCCACGATACGCGACCCCT--TGGCGCGCACCTTGCTGATTGAAAGACCGATGCCAC 81511 || || ||| | | | ||||||| | ||| || | |||||| || | Sbjct 4217 GTGCCGCGGAT--GTAGCTGTTAGTGGCGCGGATGTTGTGCATACTGATACCGATACCGC 4160 Query 81512 CTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTAT 81571 | | ||| || || || || || | || | ||| || ||||| ||||| || | Sbjct 4159 CCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTGTCGTAAATGCCCTCAATAGAGT 4100 Query 81572 CTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGA 81631 | | | ||| | | | |||||| |||| |||||| | | | |||||| |||| Sbjct 4099 CATCCTGCATAGCCAATAGGAAACAAGAAGACAACTGAGGACGTGGCGTGCCGGCGTTGA 4040 Query 81632 ACAGTGTTGGGGTCGCGTGAATGAA 81656 | || || ||||| ||||| |||| Sbjct 4039 AGAGAGTAGGGGTGGCGTGCGTGAA 4015 >seq1842 Length=4307 Score = 170 bits (188), Expect = 2e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||| | ||||||||||| ||||| || || || ||| | Sbjct 4299 ATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACCCTCGACGTGGAGCCGTCG 4240 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | || ||||| || |||||||||||||| || ||||| || |||||| Sbjct 4239 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGACCAG 4180 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || || ||||| ||||| |||||||| | ||| ||||| ||| ||||| || Sbjct 4179 CAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGAGC-GACTACAA 4121 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || |||||||| || || |||||||||||||||| Sbjct 4120 CATCCAGAAGGAGTCTACTCTTCACCTGGTGCTGCGTCTTCGCGGTGG 4073 >seq2906 Length=21328 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || |||||||| ||||| |||||||| || || || || || ||| | Sbjct 18459 AATGCAGATTTTCGTCAAGACCCTTACGGGCAAGACCATCACGCTCGACGTGGAGCCGTC 18400 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || ||||||| ||| | ||| ||||||||||||||||||||||| || || ||||| Sbjct 18399 GGACAGCATTGACAATGTCAAGCAGAAAATTCAGGACAAGGAGGGAATCCCGCCTGACCA 18340 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || || || || ||||| |||||||| | || || || | ||||| || Sbjct 18339 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTGTCGGACTACAA 18280 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || || ||||||| || ||||| Sbjct 18279 CATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGTCTGCGTGGTGG 18232 >seq4510 Length=93785 Score = 143 bits (158), Expect = 3e-29 Identities = 369/556 (66%), Gaps = 7/556 (1%) Strand=Plus/Plus Query 64297 TTCCCAATT-AGGTACCCTGATTTGTGGGAGCTTTACAAGAAAGCCATCGCAAGTTTCTG 64355 ||||| ||| ||| || | || ||||| || | |||||||||||| || ||||| Sbjct 47486 TTCCCCATTCAGGAACAC-GAAGTGTGGCAGATGTACAAGAAAGCCGAGGCCTCCTTCTG 47544 Query 64356 GACGGTCGAGGAGGTTGATCTCGCCAAGGATCTCAGCGACTGGGAAAACCTAAACTCACA 64415 ||||| |||||| | || || | | || |||| |||||| || || | | ||| Sbjct 47545 GACGGCTGAGGAGCTCGACCTTGTGCACGACCTCAAGGACTGGAGCAAGCTCA-CGGACA 47603 Query 64416 G-GAACAGCACTTCATCAAGTTGGTCCTAGCATTCTTCGCATCAAGTGACGGAATTGTGT 64474 || | |||||||||||| || || || ||||||||| | |||||||| || ||| Sbjct 47604 ACGAGCGACACTTCATCAAGCACGTGCTCGCCTTCTTCGCAGCCAGTGACGGTATCGTGA 47663 Query 64475 TTGAGAATTTGGACCTAAATTTTACAAAGGATGTTCAGATCCCAGAGGCGCGGTCATTCT 64534 ||||| |||| | | || || | || || || ||| | || ||||| || | |||| Sbjct 47664 ACGAGAACTTGGCCATGAACTTCAGCAACGAAGTGCAGGTGCCCGAGGCTCGTTGCTTCT 47723 Query 64535 ATGCGTATCAGGGATTTAACGAAAGTATTCATGGCGAGACGTATTCGCTCATGATTGACA 64594 ||| | ||| | || | ||||| ||| || || || | ||||||| Sbjct 47724 ATGGCTTCCAGATCGCCATTGAGAACATTCACTCGGAGGTCTACTCACTGCTCATTGACA 47783 Query 64595 AGTTTGTTCGGGATCCTGTCGAGAAGGATGGACTGTTCAGGGCTATAGAGACTGTACCCG 64654 || | ||| | |||||||||| || | | || || ||||| | || Sbjct 47784 CGTACATCAAGGACGCGATCGAGAAGGACCATCTCCTGCGTGCCATTGAGACCATCCCTT 47843 Query 64655 CTGTTACTAAAAAGGCTGAATGGGCCATCCGGTGGATGAATC---GTGGGTCGTCGTTTG 64711 ||| || || |||||| | ||||| || |||| | | ||| || || | Sbjct 47844 GTGTCACGAAGAAGGCTCACTGGGCACTCAAGTGGTGCGACCCGCGTGTATCCTCCTACC 47903 Query 64712 GTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTT 64771 |||| || ||||| || ||||||||| || ||||| || || || ||||| | Sbjct 47904 CAGAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGGCATCTTCTTCTCGGGCTCTTTCTGCT 47963 Query 64772 CTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGA 64831 | || || |||||||| ||||| ||||| ||||| |||||| || ||||||||||| | Sbjct 47964 CCATCTTTTGGCTAAAGAAGCGCGGCCTCATGCCCGGTCTGAGCTTCTCGAACGAGCTCA 48023 Query 64832 TCTCTCGGGACGAGGG 64847 || ||| |||||||| Sbjct 48024 TCAGTCGTGACGAGGG 48039 >seq2806 Length=38520 Score = 127 bits (140), Expect = 2e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| |||||||| ||||| | || |||||||| || || || || || ||| | Sbjct 7492 ATCATGCAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACGCTCGACGTGGAGCCG 7433 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || ||||||| ||| | ||| ||||| ||||||||||||||||| || || ||| Sbjct 7432 TCGGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATCCCGCCTGAC 7373 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| || || || || || ||||| |||||||| | || || || | ||||| Sbjct 7372 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTAC 7313 Query 27583 AATGTCCAAAAGG 27595 || |||| |||| Sbjct 7312 AACATCCAGAAGG 7300 >seq2791 Length=80716 Score = 118 bits (130), Expect = 1e-21 Identities = 206/298 (69%), Gaps = 4/298 (1%) Strand=Plus/Minus Query 31954 GATATCAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTG 32013 |||| | |||| || | ||| |||| || || |||||| || ||||| ||||| Sbjct 14916 GATAACCAGCGATCGCTGCCATCGGTGGTCGATGGTCTCAAGATCTCGCAGCGGAAGGTT 14857 Query 32014 ATATACGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGC 32073 | | ||| || | || || || ||||||| |||||||||| |||||| | || Sbjct 14856 CTGTTCGCTTGTTTAAAACGCAAGCTTACGAGTGAAGTGAAGGTGGCTCAGCTGGCTGGT 14797 Query 32074 TACGTGGCAG--AGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTG 32131 ||| |||| |||| || || ||||||||||| || || ||| | || || |||| Sbjct 14796 TACT--GCAGTGAGCACACAGCTTATCACCACGGAGAAGCCTCGTTACACTCGACGATTG 14739 Query 32132 TCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGAC 32191 ||||| | || ||| |||| || || | ||||||||| |||| | || || || | Sbjct 14738 TCAACATGGCGCAGGACTTCGTGGGGTCCAATAACCTGCCGCTACTGTACCCGTCAGGTC 14679 Query 32192 AGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249 | ||||| || || || ||||| ||||| ||||| || | || || |||||||| Sbjct 14678 AATTTGGTACTCGACTGCAAGGTGGTAAGGACGCTGCTAGTCCTCGATATATCTTCAC 14621 >seq3968 Length=9653 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||||||||| || || || || |||||||||||| | || || ||||| ||| Sbjct 9644 AAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAGCGTTTGATCTTCGCTGGCAAG 9585 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||| | || || || ||||| || |||| ||||| || || || || Sbjct 9584 CAGCTGGAGGACGGCCGCACGCTGAGTGACTACAACATCCAGAAGGAGTCTACACTCCAC 9525 Query 27610 CTAGTCTTGCGTCTTCGCGGTGGA 27633 || || ||||||| || || ||| Sbjct 9524 CTGGTGCTGCGTCTGCGTGGCGGA 9501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570264140697680