Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq2408 158 1e-33 >seq2408 Length=74190 Score = 158 bits (174), Expect = 1e-33 Identities = 446/677 (66%), Gaps = 25/677 (4%) Strand=Plus/Minus Query 29864 AGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGG 29923 ||||| ||| || |||||||| | | |||||| ||||| ||||| || | |||| Sbjct 72209 AGCTGCTTCTGAAGGGGTTCCACATGGTTCAGGTACACGTGTGCGTCGCCGATAACGTGG 72150 Query 29924 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG--AGGAGAGAGT 29981 | ||||| || |||| ||| || || || || || | || || |||| || || | || Sbjct 72149 ATGAACTCGCCAGGTTTTAGTCCCGTCACTTGTGCAACCA-GT-CGTGTCAGCAGCGCGT 72092 Query 29982 AGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGAC 30041 ||||||| ||||| || || || || || |||||||| |||| | |||||| | ||||| Sbjct 72091 AGCTGGCAATGTTGAAAGGCACTCCAAGACCCATGTCGGCCGATCGCTGGTACATCTGAC 72032 Query 30042 ACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCA 30101 |||| | || |||| | ||||| ||||| || | |||||| || || || |||| Sbjct 72031 ACGATAATTCCCCGTTGGCAACGTAGAACTGGCAGAACATGTGGCAAGGCGGCAGGGCCA 71972 Query 30102 TGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGT 30161 | | | || |||||||| || ||| | || || | ||| || || Sbjct 71971 TCTCGTTGAGATCGGCCGGGTTCCACGCCGACAGCACAATCCGTCGGTCAGTAGGATTCG 71912 Query 30162 TCCTGA---TGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCT 30217 | | | || | ||| | ||| ||||| ||||| || || | ||||||| Sbjct 71911 TACGCAGCTTGTGAATCACCTC----TGCTAGCTGGTCCACACCTTGGCCAGTGTAGTCT 71856 Query 30218 GCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCC 30277 || |||||||||||||| || || || || | ||||||||| ||||| |||||||| Sbjct 71855 GCATGCATGTCCGTGTACTTGGCACCAAAGTGACGCCACTGGAAGCCGTAAACCGGTCCA 71796 Query 30278 AGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTG 30337 |||||||| | |||| | || | || | | |||| | | || | || || ||| Sbjct 71795 AGGTCTCCAACCTCCCGATCCTGCAGTCCTCGGCTATCCAGATACTCGCGCGATCCATTG 71736 Query 30338 GCGTCCCAGATCTTTACCCCCTTCT----CAGAGAGCTCTTTGGAGTTTGTGGACCCTCT 30393 ||||||| || | | | |||| ||||| | | || ||||| || || Sbjct 71735 CCGTCCCAAATATGAATATCTTTCTGCTGCAGAGTG----TGGGCACTTGTGTCTCCACT 71680 Query 30394 GACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG 30453 | |||||||| |||||||| | || | ||| || |||| |||||||| || | Sbjct 71679 AATAAACCACAGTAGCTCCTCGGCTACACCTCGCCAGAACACCCGTTTGGTCGTCAGCAA 71620 Query 30454 GGGAA----ACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTC 30509 |||| | ||| || | || | | |||| ||| | ||||| || ||||| | Sbjct 71619 TGGAAAGACATTGTTCC-TCAGACTGAACCTCATCTGCGCTCCAAAGACCGACAACGTGC 71561 Query 30510 CCGTGCCCGTCCTGTCT 30526 |||| || || | |||| Sbjct 71560 CCGTTCCAGTACGGTCT 71544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406278267068988