Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2408 190 2e-43 >seq2408 Length=74190 Score = 190 bits (210), Expect = 2e-43 Identities = 343/497 (69%), Gaps = 12/497 (2%) Strand=Plus/Plus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 ||||| |||||||||| ||||| |||| |||| || || | ||||||||| |||||| Sbjct 71614 TTTCCATTGCTGACGACCAAACGGGTGTTCTGGCGAGGTGTAGCCGAGGAGCTACTGTGG 71673 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGA-----AGATCT 34334 || | || || | ||| | || | | ||| | | | | || | || | Sbjct 71674 TTTATTAGTGGAGACACAAGTGCCCA----CACTC-TGCAGCAGAAAGATATTCATATTT 71728 Query 34335 GGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGG 34394 |||||| | || || || || | |||||| | || || | | |||||||| | Sbjct 71729 GGGACGGCAATGGATCGCGCGAGTATCTGGATAGCCGAGGACTGCAGGATCGGGAGGTTG 71788 Query 34395 GCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGA 34454 | ||| | || ||||| ||||| ||||||||| | |||||||| || |||| || | Sbjct 71789 GAGACCTTGGACCGGTTTACGGCTTCCAGTGGCGTCACTTTGGTGCCAAGTACACGGACA 71848 Query 34455 GCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCGACACCTTG 34513 | || ||||| | || || || | ||||||||| |||| | ||||| ||| || Sbjct 71849 TGCATGCAGACTACACTGGCCAAGGTGTGGACCAGCTAGCAG-AGGTGATTCACAAGCTG 71907 Query 34514 AAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCT 34573 ||| ||| |||| || |||| ||| ||| |||||||||||| |||||| Sbjct 71908 CGTACGAATCCTACTGACCGACGGATTGTGCTGTCGGCGTGGAACCCGGCCGATCTCAAC 71967 Query 34574 CTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTG 34633 |||||| || || || ||||||| ||||||| |||||||| || || ||||| | Sbjct 71968 GAGATGGCCCTGCCGCCTTGCCACATGTTCTGCCAGTTCTACGTTGCCAACGGGGAATTA 72027 Query 34634 TCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCT 34693 || || ||| | || || ||||||| |||||||| | || ||||| ||||||||||| Sbjct 72028 TCGTGTCAGATGTACCAGCGATCGGCCGACATGGGTCTTGGAGTGCCTTTCAACATTGCC 72087 Query 34694 AGTTACGCTCTGCTCAC 34710 || ||||| ||||| || Sbjct 72088 AGCTACGCGCTGCTGAC 72104 Score = 190 bits (210), Expect = 2e-43 Identities = 343/497 (69%), Gaps = 12/497 (2%) Strand=Plus/Minus Query 6635 GTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCGT 6694 || ||||| ||||| || ||||||||||| ||||| || | |||||||| ||||||| Sbjct 72104 GTCAGCAGCGCGTAGCTGGCAATGTTGAAAGGCACTCCAAGACCCATGTCGGCCGATCGC 72045 Query 6695 TGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCAC 6754 || || | ||| || || | ||||| || || |||||||| ||||||| ||||||| Sbjct 72044 TGGTACATCTGACACGATAATTCCCCGTTGGCAACGTAGAACTGGCAGAACATGTGGCAA 71985 Query 6755 GGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTG 6814 || || || |||||| |||||| |||||||||||| ||| ||| |||| || | Sbjct 71984 GGCGGCAGGGCCATCTCGTTGAGATCGGCCGGGTTCCACGCCGACAGCACAATCCGTCGG 71925 Query 6815 TCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC-AGCTGGTCCGCTCCCTGTCC 6873 ||| ||| ||| || ||| ||||| | |||| ||||||||| | || || || Sbjct 71924 TCAGTAGGATTCGTACGCAGCTTGTGAATCACCT-CTGCTAGCTGGTCCACACCTTGGCC 71866 Query 6874 CGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTA 6933 | ||||| || | | || |||| || |||||||| | ||||||||| ||||| Sbjct 71865 AGTGTAGTCTGCATGCATGTCCGTGTACTTGGCACCAAAGTGACGCCACTGGAAGCCGTA 71806 Query 6934 GACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCG 6993 ||||| || | ||| || |||||||| | | || || | |||||| | || || Sbjct 71805 AACCGGTCCAAGGTCTCCAACCTCCCGATCCTGCAGTCCTCGGCTATCCAGATACTCGCG 71746 Query 6994 AGACCCGTGAGCGTCCCAGATCT-----TCACCCCCCGGGACGAGAGCTCCTTGGTGTTC 7048 || || | ||||||| || | || | | | | ||| | | || | Sbjct 71745 CGATCCATTGCCGTCCCAAATATGAATATCTTTCTGCTGCA-GAGTG----TGGGCACTT 71691 Query 7049 GTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTC 7108 ||| | || || | |||||||| ||||||||| | || || |||| |||| ||||| Sbjct 71690 GTGTCTCCACTAATAAACCACAGTAGCTCCTCGGCTACACCTCGCCAGAACACCCGTTTG 71631 Query 7109 GTCGTCAGCAGCGGAAA 7125 |||||||||| ||||| Sbjct 71630 GTCGTCAGCAATGGAAA 71614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448226040316080