Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1842 150 4e-31 seq2906 141 2e-28 seq2806 118 3e-21 seq4581 109 1e-18 seq3968 107 5e-18 seq3969 89.7 1e-12 seq5881 84.2 5e-11 >seq1842 Length=4307 Score = 150 bits (166), Expect = 4e-31 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||| || ||||| ||||| || || || |||| ||||| ||| || || Sbjct 4079 CGAAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTG 4138 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| ||||||||||| || || || ||||| |||||||| ||| Sbjct 4139 CGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCT 4198 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| || ||||| |||||||| ||||| | ||| || | |||||||| | Sbjct 4199 TCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGG 4258 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||||||| ||||| || || | ||| | ||||| Sbjct 4259 GTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCAT 4299 >seq2906 Length=21328 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || || || || |||| ||||| || | || ||| Sbjct 18237 ACGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGT 18296 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| || || || ||||| ||||| || || Sbjct 18297 GCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCC 18356 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || || || ||||| ||| || ||| |||| || | |||||||| | Sbjct 18357 CTCCTTGTCCTGAATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAG 18416 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATG 225719 |||||| ||||||||||| | || || | ||| | |||||||| || Sbjct 18417 CGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTTCTG 18464 >seq2806 Length=38520 Score = 118 bits (130), Expect = 3e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| || |||||||| || || || ||||| ||||| || || ||| Sbjct 7332 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATTCCCTCC 7391 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| ||||| || ||||| ||| || ||| |||| || | |||||||| | |||| Sbjct 7392 TTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTG 7451 Query 225676 ATCGTCTTGCCCGTCAAAGTTTT 225698 || |||||||||||||| || || Sbjct 7452 ATGGTCTTGCCCGTCAAGGTCTT 7474 >seq4581 Length=10530 Score = 109 bits (120), Expect = 1e-18 Identities = 162/227 (71%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 193524 GCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCCGCTTGAGCGACGAGAAT-GTGATG 193582 ||||| ||||||| |||||||||| ||| ||| |||||| | || || | || Sbjct 4652 GCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAA- 4594 Query 193583 CCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTTCCTTCCCTCTCGTACTTTTCGTA 193642 ||| || | ||||| || | |||| | | || ||||||| ||||||||||||| || Sbjct 4593 CCACAGCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCTTCTCGTACTTTTCATA 4534 Query 193643 CAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGACCGGGAGCTTCCTTTGGGCAAAA 193702 ||| | ||||| || | || || |||| ||||| |||||||| || || || || Sbjct 4533 CAGAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAGGAGCTTCGTTGGGACAGAA 4474 Query 193703 GAGACTCCAATCTCCATCACTTTCCACCCTCTTCATGAAGAGGTCAG 193749 | |||||| | |||| ||||| |||||||||||||| |||| Sbjct 4473 CAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAG 4427 >seq3968 Length=9653 Score = 107 bits (118), Expect = 5e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || |||||||| || || || || |||| ||||| || || || Sbjct 9507 ACGCAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCACTCAGCGT 9566 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||||||||| | || || ||||| ||||| || || Sbjct 9567 GCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCC 9626 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCAC 225638 ||||||||| |||||||||||||| || Sbjct 9627 TTCCTTGTCCTGGATCTTTTGCTTGAC 9653 >seq3969 Length=66925 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 225610 CCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCT 225669 ||||||||||| |||||||||||||| || ||||| | ||| || | |||||||| Sbjct 1 CCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCC 60 Query 225670 AACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 | ||||||||||||||| ||||| || || | ||| | ||||| || Sbjct 61 AGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAAATCTGCATCTT 107 >seq5881 Length=2178 Score = 84.2 bits (92), Expect = 5e-11 Identities = 111/149 (74%), Gaps = 5/149 (3%) Strand=Plus/Minus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 || ||||||||| |||| ||||| ||| ||||||||||||| ||||| || || | | Sbjct 1687 AGAGTTGGTAAGGTTCTGCGCGTTTTATTGAATTAAACCACATGCTCCAACGATTGTGTA 1628 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTA-GTACTCAGGTGGA-ATAT 7848 | || |||||| || |||||| ||| || || ||| | || | ||||| ||| | | Sbjct 1627 AACTCCCGTCAATTCCTTTGAATTTCAATCTCGCGATTATACTTTTTCAGGCGGAGAGCT 1568 Query 7849 TTACGCGTTAGCTTAATTA-ATATAAAAA 7876 | | ||||||||| |||| || |||||| Sbjct 1567 TAATGCGTTAGCT--ATTATATCTAAAAA 1541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192432052583366