Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2906 165 2e-35 seq2806 149 1e-30 seq1842 149 1e-30 seq4510 127 4e-24 seq3968 116 8e-21 seq2791 114 3e-20 seq6011 96.9 7e-15 seq3969 95.1 3e-14 seq3161 95.1 3e-14 >seq2906 Length=21328 Score = 165 bits (182), Expect = 2e-35 Identities = 178/233 (76%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || ||||| || | || || || |||||||||||||| | Sbjct 18231 ACCACCACGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 18290 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || ||||| ||||||| ||| || |||||| ||| Sbjct 18291 CAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 18350 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 || ||||||||||| || || || ||| || || | || || ||||||| | || | Sbjct 18351 GATTCCCTCCTTGTCCTGAATTTTCTGC-TTGACATTGTCAATGCTGTCCGACGGCTCCA 18409 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 | ||||| ||||| ||||| ||||| | ||||| ||||| |||||||||||| Sbjct 18410 CGTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTTC 18462 >seq2806 Length=38520 Score = 149 bits (164), Expect = 1e-30 Identities = 148/189 (78%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | ||||||||||| ||||| || || || ||||| |||||| Sbjct 7302 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 7361 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATC 283030 | || || |||||| ||| || ||||||||||| ||||| || ||| || || | || Sbjct 7362 AGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGC-TTGACATTGTC 7420 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||||| | || || ||||| ||||| ||||| |||||||| ||||| || || Sbjct 7421 AATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAAA 7480 Query 283091 TATCTGCAT 283099 |||||||| Sbjct 7481 GATCTGCAT 7489 >seq1842 Length=4307 Score = 149 bits (164), Expect = 1e-30 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || || ||||| || | || || || |||||||||||||| Sbjct 4072 ACCACCGCGAAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCT 4131 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| || ||||| || || || || || ||||||| ||| || |||||| ||| Sbjct 4132 CAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 4191 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||| || |||||||| || ||||| ||| || ||| | ||||| | |||||| | || | Sbjct 4192 AATGCCTTCCTTGTCCTGAATCTTCTGC-TTCACGTTGTCGATCGAGTCCGACGGCTCCA 4250 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | ||||| || || ||||| || ||||| ||||| ||||| |||||||| Sbjct 4251 CGTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCAT 4299 >seq4510 Length=93785 Score = 127 bits (140), Expect = 4e-24 Identities = 603/939 (64%), Gaps = 33/939 (4%) Strand=Plus/Plus Query 229536 TTCCCTATTCAATACCCCGACCTCTGGGATATGTATAAGAAGGCGGTGGCAACCTTTTGG 229595 ||||| ||||| | | ||| | ||| | ||||| ||||| || | ||| |||| ||| Sbjct 47486 TTCCCCATTCAGGAACACGAAGTGTGGCAGATGTACAAGAAAGCCGAGGCCTCCTTCTGG 47545 Query 229596 ACCACGGAGGAAGTCCCCCTAAATGCA-GACGTCGTCGACTGGCGCGAGAAACTCAACGA 229654 || | ||||| || ||| |||| ||| || |||||| || || |||| || Sbjct 47546 ACGGCTGAGGAGCTCGACCTTG-TGCACGACCTCAAGGACTGGAGCAAG---CTCACGGA 47601 Query 229655 CGATGAACGCCATTTCATCAAGCACATTCTCGGGTTTTTTGCAGGTTCCGACGGTATCGT 229714 | | || || || |||||||||||| | |||| || || |||| ||||||||||| Sbjct 47602 CAACGAGCGACACTTCATCAAGCACGTGCTCGCCTTCTTCGCAGCCAGTGACGGTATCGT 47661 Query 229715 GATGGAAAACTTGCAGACTAACTTCAGCGTCGAAGTAACGGTCCCAGAGGCACGGCAGTT 229774 || || |||||| | ||||||||| |||||| ||| || ||||| || || Sbjct 47662 GAACGAGAACTTGGCCATGAACTTCAGCAACGAAGTGCAGGTGCCCGAGGCTCGTTGCTT 47721 Query 229775 TTACGCATACCAGACGTTCAATGAATCTGTTCATTCGGAACAGTATGCCCTTCTTATTGA 229834 || | | ||||| || ||| |||| ||||| || | || || ||||| Sbjct 47722 CTATGGCTTCCAGATCGCCATTGAGAACATTCACTCGGAGGTCTACTCACTGCTCATTGA 47781 Query 229835 CGCGCTCATTTCCGACGAGCGAGAGCGTGCCGAACTGTTCGACGCCATCGAAAACATCCC 229894 | || ||| |||| | ||| | | | || | ||||| || | |||||| Sbjct 47782 CACGTACATCAAGGACGCGATCGAGAAGGACCATCTCCTGCGTGCCATTGAGACCATCCC 47841 Query 229895 GGCGGTCCATAACAAAGCGCGTTGGGCTCAGAAGTGGCTGGAACCCAGTAAA---TCGTT 229951 ||| || || || | ||||| | |||||| || || || | || | Sbjct 47842 TTGTGTCACGAAGAAGGCTCACTGGGCACTCAAGTGGTGCGACCCGCGTGTATCCTCCTA 47901 Query 229952 TGCAGAGCGTCTCGTCGCGTGGGTGTGC-GTTGAGGGTATTCTGTTCTCCGGGAGTTTCT 230010 ||||||| || | || | | ||| || || || || | ||||| || ||||| Sbjct 47902 CCCAGAGCGCCTGCTGGCTTTCG-CTGCTGTGGAAGGCATCTTCTTCTCGGGCTCTTTCT 47960 Query 230011 GCGCCATCTTTTGGCTACGCAACAAG---GGCGTCATGCCCGGGCTCGGTCTGTCGAACG 230067 || |||||||||||||| || ||| ||| |||||||||| || | | ||||||| Sbjct 47961 GCTCCATCTTTTGGCTA---AAGAAGCGCGGCCTCATGCCCGGTCTGAGCTTCTCGAACG 48017 Query 230068 AATTCATCAGCAGGGACGAAGGTCTTCACCAGCAATTTGGCGAGGTCTTGTATTCGAAGC 230127 | ||||||| | ||||| || | ||| | | || | | | ||||| || |||| Sbjct 48018 AGCTCATCAGTCGTGACGAGGGCATGCACACGGACTTCGCCTGCCTTTTGTACTCCAAGC 48077 Query 230128 TAAATAACAAACTACCTTTCGA-AACGGTG-AAAC-AAATCGTCACAGAAGTAGTTGCAA 230184 | | ||| || || || | | ||| | || | ||| | || | || | | Sbjct 48078 TGGTCACCAAGCTGCC---AGAGAGCCGTGTACACGAGATCATTCGTGACGCTGTGGTGA 48134 Query 230185 ATGAAAAGGAGTTCATTTGCGACGCTATTCCT-TGCCGTCTTATCGGCATGAATGCTGAT 230243 ||| | ||||| | | ||| | | ||| || | || || || ||||| ||| Sbjct 48135 TTGAGCACGAGTTTGTGCGTGACTCGCTCCCTGTGGAG-CTGATTGGTATGAACTCTGCC 48193 Query 230244 CTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGG---GTAC 230300 |||||| | || || || || ||||| ||||| ||| | || |||| || || | Sbjct 48194 CTCATGTGCCAGTACATTGAGTTCGTGGCTGACCGTCTGCTCTACTCGCTTGGTGTGTCC 48253 Query 230301 GAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGG 230360 ||| | || || | |||||||| || | | ||||| | || || ||||| || Sbjct 48254 AAGA---TCTACCACGCTAAGAACCCTTTTGACTGGATGGACATGATCTCTCTCCAAGGC 48310 Query 230361 AAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTA-TCAAAGGCC--CGGTGTATTAAAA 230417 || || ||||| ||||| |||||||| |||| || || |||||| || || | Sbjct 48311 AAGACCAACTTTTTCGAGAAGCGTGTGGGCGAGTACTCCAAGGCCGGCGTTGGTGTCGCC 48370 Query 230418 CCTGAGGATAATGTTTTCGCTATGGACGGTGACTTTTAA 230456 ||||||| | |||||| || |||| | ||||||||| Sbjct 48371 GCTGAGGAGCAGGTTTTCACTCTGGATGCGGACTTTTAA 48409 >seq3968 Length=9653 Score = 116 bits (128), Expect = 8e-21 Identities = 116/149 (78%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || || ||||| || | || || || ||||||||||||||| Sbjct 9502 CCGCCACGCAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCACTC 9561 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || || || ||||||||||| || |||||| ||| Sbjct 9562 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 9621 Query 282993 ATACCCTCCTTGTCTTGGATC-TTTGCTT 283020 || || |||||||| |||||| ||||||| Sbjct 9622 ATGCCTTCCTTGTCCTGGATCTTTTGCTT 9650 >seq2791 Length=80716 Score = 114 bits (126), Expect = 3e-20 Identities = 293/443 (66%), Gaps = 10/443 (2%) Strand=Plus/Plus Query 273620 AGACCAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGAC 273679 ||||||||| || || || || | |||||||| || | |||| ||||| || || Sbjct 14461 AGACCAACCCGTACCGATTCCTTCCGCCCCATTCACAAGCAACATCGGAATAATAGGCAC 14520 Query 273680 ATAATATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCATC 273739 || || | ||||||| |||||||||| ||| |||| || || || Sbjct 14521 GTAGTACACTGGCTCAACAGGGAAGCCATCGTCGTCGGCGTAGCGTAACAGCGCGTCGTC 14580 Query 273740 CGTATCAACGAAAACCTTTCGCGTCTGAGGATTCAGTTTCGTGAAAATGTACCTGGCACT 273799 || ||| ||| || || || | |||| |||||| || || | | ||| Sbjct 14581 TTCTTCGGGGAATACCAAGCGAGTGTGCTTCTGCAGTAACGTGAAGATATATCGAGGACT 14640 Query 273800 CGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCT-CGGG--CAGTAGC-- 273854 ||| |||||| ||||||||||| | | |||||| ||||| |||| ||||||| Sbjct 14641 AGCAGCGTCCTTACCACCTTGCAGTCGAGTACCAAATTGACCTGACGGGTACAGTAGCGG 14700 Query 273855 CAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGG 273914 ||| |||| || || ||| | ||||| ||||| || || || ||| || | Sbjct 14701 CAGGTTAT-----TGGACCCCACGAAGTCCTGCGCCATGTTGACAATCGTCGAGTGTAAC 14755 Query 273915 GATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCACTGAACTGAGCAACC 273974 || | || ||||||||||| || |||| || | |||||| | |||||| ||| Sbjct 14756 GAGGCTTCTCCGTGGTGATAAGCTGTGTGCTCACTGCAGTAACCAGCCAGCTGAGCCACC 14815 Query 273975 TTCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACACCTTCCGCTGCGAGGGC 274034 ||||| || ||||| | || || || || | ||| ||||||||||||||| | Sbjct 14816 TTCACTTCACTCGTAAGCTTGCGTTTTAAACAAGCGAACAGAACCTTCCGCTGCGAGATC 14875 Query 274035 TTGAACCCATCAACGACCGATGG 274057 |||| ||||| || |||||||| Sbjct 14876 TTGAGACCATCGACCACCGATGG 14898 >seq6011 Length=24561 Score = 96.9 bits (106), Expect = 7e-15 Identities = 253/383 (66%), Gaps = 6/383 (2%) Strand=Plus/Plus Query 273597 GGGTTGTAACTCGGAACGTTCGTAGACCAACCGGTGCCAATACCGGAAGAACCATTCACC 273656 |||||||| | ||||| | |||||||| || || |||||| | || ||||| Sbjct 13403 GGGTTGTAGTTGGGAACTGAGCTGGACCAACCCGTTCCGATACCGTCACTGCCGTTCACG 13462 Query 273657 AGAATACTCGGGATAATTGGGACATAATATTCGGGCTCAATTTTATCACCATCGTCGTAA 273716 || | | ||||||||||||| || |||| ||||| || | || || || | Sbjct 13463 AGCACCATGGGGATAATTGGGATGTACCATTCCGGCTCGATGGACTGGCCGTCTTCATTC 13522 Query 273717 AGGTACTTCAACAAAGCATCATCCGTATCAACGAAAACCTTTCGCGTCTGAGGATTCAGT 273776 || ||||||| | | | ||| | | || | | || || | | | || Sbjct 13523 AGATACTTCAGACAGTCGTTGTCCAAAGGATCGTAGATACGGCGAGTAAGCTGCTCTAGG 13582 Query 273777 TTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAAC 273836 || |||||||| || | ||||| || ||| || ||||| ||| | || ||| ||| Sbjct 13583 TTGGTGAAAATATAACGAGCACTGGCCGAGTCTTTACCACCCATCAGACGCGTACCGAAC 13642 Query 273837 TGACCC-TCGGG--CAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATA 273893 ||||| ||||| |||||| || ||||||||||| || ||| | ||||| |||||| Sbjct 13643 TGACCAATCGGGGACAGTAG---GTGGATGTTGTTGCTGCCAACGAAGTCCTGCGCCATA 13699 Query 273894 TTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATA 273953 ||||||||| ||||| || | ||| ||||| || ||||| ||| || | | Sbjct 13700 TTCACGATACAGCCCTGTAGACTTTGCTCACCGTGATGGTAGGCAGAGTGCTCAGACACG 13759 Query 273954 TAACCACTGAACTGAGCAACCTT 273976 || ||| ||||| || ||||| Sbjct 13760 TAGCCAGCCAACTGTGCCACCTT 13782 >seq3969 Length=66925 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 || |||||||| ||||||||| || ||| | ||||| | |||||||| || || || Sbjct 1 CCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCC 60 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || ||||||||||| || ||||| ||||| ||||| |||||||| || Sbjct 61 AGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAAATCTGCATCTT 107 >seq3161 Length=25874 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| ||||| || ||||||| ||||||||||| |||| ||| ||||| Sbjct 15435 TCCTTGTCCTCACCAGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTCTCATCAAGG 15376 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 || ||| |||||||||||||||||||| || ||||| || | |||||| || ||| Sbjct 15375 TGCGACTCAATGTGGTGGAAAGCGTGCTGAGCGACGTAGGCGAAACGCATGGAAGGGTGC 15316 Query 316282 TTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTT 316341 ||||| || ||| | || | |||| | || || |||| || || || ||| Sbjct 15315 TTCCACACCTGACCACTGGTCGGCTCCACTTCACCCGTCAGCATCTTGATCAGCGTAGAC 15256 Query 316342 TTTCCCGCGCCGTTTTCACCCACGACACCGAT 316373 || || || ||||| |||| ||| |||| Sbjct 15255 TTACCGGCACCGTTGGGTCCCAGCACAGCGAT 15224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046652173775806