Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2906 147 5e-30 seq1842 129 1e-24 seq2806 118 3e-21 seq3969 84.2 5e-11 >seq2906 Length=21328 Score = 147 bits (162), Expect = 5e-30 Identities = 162/215 (75%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||||| || || || || || || || ||||| ||||| ||||| Sbjct 18461 AAAATGC---AGATTTTCGTCAAGACCCTTACGGGCAAGACCATCACGCTCGACGTGGAG 18405 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || |||| ||| || || ||||| || || ||||||||||| || |||||||| || Sbjct 18404 CCGTCGGACAGCATTGACAATGTCAAGCAGAAAATTCAGGACAAGGAGGGAATCCCGCCT 18345 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 |||||||| || || ||||||||||| || |||||||| || || | ||||| | || Sbjct 18344 GACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTGTCGGAC 18285 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || ||| |||| || || || || ||||| || || Sbjct 18284 TACAACATCCAGAAGGAGTCGACCCTGCACCTGGT 18250 >seq1842 Length=4307 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || || || || || |||||||| ||||| || ||| Sbjct 4296 CAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACCCTCGACGTGGAGCCGTCGGAC 4237 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || |||||||||||||| ||||| || || || |||||||| Sbjct 4236 TCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGACCAGCAG 4177 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||| || || | || || ||| || ||| || Sbjct 4176 CGTCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGAGCGACTACAACATC 4117 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 4116 CAGAAGGAGTCTACTCTTCACCTGGT 4091 >seq2806 Length=38520 Score = 118 bits (130), Expect = 3e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || | || || || || ||||| ||||| ||||| || ||| Sbjct 7486 CAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCGGAC 7427 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||| || || ||||| || || || |||||||| || |||||||| || |||||||| Sbjct 7426 AGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATCCCGCCTGACCAGCAG 7367 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || | || || | || || ||| || Sbjct 7366 CGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAACATC 7307 Query 178104 CAAAA 178108 || || Sbjct 7306 CAGAA 7302 >seq3969 Length=66925 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || | || || || |||||||| || || ||||| || ||| Sbjct 101 CAGATTTTCGTGAAGACCTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCGGAC 42 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 | ||||| |||||||| |||||||| |||||||| ||||| Sbjct 41 TCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203631121411866