Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq3370 145 2e-29 seq4811 125 2e-23 seq6376 87.8 4e-12 >seq3370 Length=25312 Score = 145 bits (160), Expect = 2e-29 Identities = 672/1053 (64%), Gaps = 45/1053 (4%) Strand=Plus/Minus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| ||||| || ||||||| ||||| |||||||||| ||| ||||| Sbjct 15340 CTCCTTGTCCTCACCAGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTCTCATCAAG 15281 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || ||| |||||||||||||| ||||| || ||||| || | |||||| || || Sbjct 15280 GTGCGACTCAATGTGGTGGAAAGCGTGCTGAGCGACGTAGGCGAAACGCATGGAAGGGTG 15221 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || ||| |||| | |||| || ||||| |||| ||| || || || Sbjct 15220 CTTCCACACCTGACCACTGGTCGGCTCCACTTCACCCGTCAGCATCTTGATCAGCGTAGA 15161 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCG-ATACCTGGGCAT 319228 || || |||||||| |||| |||| |||| | | || | | || | || Sbjct 15160 CTTACCGGCACCGTTGGGTCCCAGCACAGCGATACGGCTCGAAAGAGCACACGT-CACAG 15102 Query 319229 TCACGTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGT-AGC 319287 | ||||| | | || | |||||| |||| | | | ||| || || Sbjct 15101 AGATGTTGTTGATCGACGGCTTGGGGGCACCCGGGTACTGGTA-CGAACAGTTGGTCAGA 15043 Query 319288 TTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTC 319347 ||||||| |||| |||| | | ||||| || ||||||||||| | Sbjct 15042 CGAATGATGGGCTTACCCTTGTTCTTGATGTCAGCAAGGAAACCAGGCTCGGGGAAGATG 14983 Query 319348 CACGT---GGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTC 319404 || | | ||| || |||| || ||||||| | | || || || || | Sbjct 14982 AACTTGACGTTCTCCGACTCG---AGCTCGTAGTAGGCCTTGGCCTCAGGCTTCTGCTCC 14926 Query 319405 ACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATA 319464 ||||||| ||| || || |||||||| |||||||||| || | ||||| || || Sbjct 14925 ACGAACTTGGAGAGGTTACCCTTGTAGATCTTCAGCTTACGG---GTCTCGTAGTGAATG 14869 Query 319465 ATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACG 319524 || ||| || || ||||||||| || |||||||| ||||| || | | | | |||| Sbjct 14868 ATGTTGGTACACACGTTGTCGAGGAAGCCAGAGTCGTGCGACACCATGATGGAAGTAACG 14809 Query 319525 TCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAAGATGGTTG 319584 | | ||| | ||||||| | || ||| ||||| ||| | ||||| Sbjct 14808 TTCGGCAGGCTCGTCAGGTAGTTCTCCAGCCAGGCAACGTTCTTGACATCCAAGTGGTTC 14749 Query 319585 GTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGT 319644 || ||||| ||||||||||| | | || ||| | | ||| ||||| || || | ||| Sbjct 14748 GTGGGCTCATCAAGAAGCAGGATGTCGGCCTTCTGCAACATGGCACGAGCCAGCTCCAGT 14689 Query 319645 TTCATTTTCCACCCTCCGGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCAATATC---- 319700 ||||| ||||| || || ||||| || | || ||| || || || Sbjct 14688 TTCATCTTCCAACCACCCGAAAGGGTACCCA------CACCCTGGGCCTGCATCTCGGGG 14635 Query 319701 --AAAGCCAACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTTTTCCTTT 319758 ||||| || | ||||| | ||| || | || | | |||| ||| Sbjct 14634 GTGAAGCCGACACCAGCAAGAGTGTCTTCGACCTCCTTGCGGGGC---GTGTT---CTTC 14581 Query 319759 ACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCGTGTTAGAATCGGACCCGTCG--- 319815 | | ||||| | |||||||| | | || | || |||| | | ||| Sbjct 14580 AGGTCGTCATCGATCAGGATGAAGTCCACAA----CG-GACAG-CTCGGCCTCCTCGGCC 14527 Query 319816 ---AGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAG-AGGGGAACCCTTCAAG 319871 || | ||| || ||| | |||| || | ||| ||| | |||||| || ||||| Sbjct 14526 TGCAGGTTGTGCTCGACGAACACAGTCTTGAGCTCAT-CGCGGCTGGGGAATCCCTCAAG 14468 Query 319872 CTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACACAG 319931 ||||||||| || || ||||||||||| || ||||| ||||| || || ||||| Sbjct 14467 CTGGCCGTTGGAGATGGCACGCATCAGGGTCGACTTACCACAACCGTTGGGACCGCACAG 14408 Query 319932 ACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCCACC 319991 |||||| |||| || || || ||| | || | ||||||||| ||||| | ||||| Sbjct 14407 ACCGTAACGGTGACCACGCTTAAGGCGAAGACGAGCGTTGTTCAGCAGAATCATACCACC 14348 Query 319992 ATATGCCAGAGAAAATTCACAATCACACAGATC 320024 || || || || || || || | ||||| || Sbjct 14347 GTAAGCAAGCGAGAACTCGCAGTTGCACAGGTC 14315 >seq4811 Length=93528 Score = 125 bits (138), Expect = 2e-23 Identities = 558/867 (64%), Gaps = 30/867 (3%) Strand=Plus/Plus Query 229758 GTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTG 229817 |||||| || || | | ||| ||||| | ||||||||||| || | ||| | ||||| Sbjct 47283 GTTCCCCATTCAGGAACACGAAGTGTGGCAGATGTACAAGAAAGCCGAGGCCTCCTTCTG 47342 Query 229818 GACCACTGAGGAAGTTCCTCTGAACGCA-GACGTCGTCGACTGGCGTGAGAAACTCAATG 229876 ||| ||||||| | || | ||| ||| || |||||| | || |||| | Sbjct 47343 GACGGCTGAGGA-GCTCGACCTTGTGCACGACCTCAAGGACTGGAGCAAG---CTCACGG 47398 Query 229877 ACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTG 229936 || |||| || || |||||||| ||| | || | || ||||||| | || ||||| | Sbjct 47399 ACAACGAGCGACACTTCATCAAGCACGTGCTCGCCTTCTTCGCAGCCAGTGACGGTATCG 47458 Query 229937 TGATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAAT 229996 ||| || || || | ||||| || ||||| ||| || ||||| || | Sbjct 47459 TGAACGAGAACTTGGCCATGAACTTCAGCAACGAAGTGCAGGTGCCCGAGGCTCGTTGCT 47518 Query 229997 TTTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAATATGCTCTGCTT 230052 | |||| | ||| | |||| | ||| || || || || || | ||||| Sbjct 47519 TCTATGGCTTCCAGATCGCCATTGA--GAAC--ATTCACTCGGAGGTCTACTCACTGCTC 47574 Query 230053 ATCGACGCGCTTATTTCCGACGAG--CAAGAACGGAACGAGCTTTTTGATGCCATTGAAA 230110 || ||| || || |||| | | |||| | || | || | ||||||||| | Sbjct 47575 ATTGACACGTACATCAAGGACGCGATCGAGAAGG--ACCATCTCCTGCGTGCCATTGAGA 47632 Query 230111 ACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGGTAAAT 230170 |||||| || || ||||| | ||||| | || ||| || || || || Sbjct 47633 CCATCCCTTGTGTCACGAAGAAGGCTCACTGGGCACTCAAGTGGTGCGACCCGCGTGTAT 47692 Query 230171 CGTT-TGCC--GAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGA 230227 | | | || ||||| || | || | | ||| ||||| || | || || || Sbjct 47693 CCTCCTACCCGGAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGGCATCTTCTTCTCGGGCT 47752 Query 230228 GTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTA 230287 ||||||| ||||||||||||| ||| || | ||||| || || | | || | Sbjct 47753 CTTTCTGCTCCATCTTTTGGCTAAAGAAGCGCGGCCTCATGCCCGGTCTGAGCTTCTCGA 47812 Query 230288 ACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAA 230347 ||||| |||||||||| |||||||| | || | |||| | ||| |||| || | Sbjct 47813 ACGAGCTCATCAGTCGTGACGAGGGCATGCACACGGACTTCGCCTGCCTTTTGTACTCCA 47872 Query 230348 AGCTCCAGAACAAGCTACCATTCGAGACGGTCAAACAA-ATCATTACAGAAGCAGTTGAA 230406 |||| | |||||| ||| ||| || | || | |||||| || || || | Sbjct 47873 AGCTGGTCACCAAGCTGCCAGA-GAGCCGTGTACACGAGATCATTCGTGACGCTGTGGTG 47931 Query 230407 AACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGA 230465 | || | ||||| | ||||| | | || ||| | || ||||| |||||| ||| Sbjct 47932 ATTGAGCACGAGTTTGTGCGTGACTCGCTCCC-TGTGGAGCTGATTGGTATGAACTCTGC 47990 Query 230466 ACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGT---TA 230522 || ||| | |||||||| || ||||| || ||||| | | | |||||| | Sbjct 47991 CCTCATGTGCCAGTACATTGAGTTCGTGGCTGACCGTCTGCTCTACTCGCTTGGTGTGTC 48050 Query 230523 CGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGG 230582 | ||| | ||| || |||||||||| |||| | ||||| | || || || ||||| Sbjct 48051 CAAGA---TCTACCACGCTAAGAACCCTTTTGACTGGATGGACATGATCTCTCTCCAAGG 48107 Query 230583 GAAGACCAACTTCTTCGAAAAGCGTGT 230609 ||||||||||| ||||| |||||||| Sbjct 48108 CAAGACCAACTTTTTCGAGAAGCGTGT 48134 >seq6376 Length=24334 Score = 87.8 bits (96), Expect = 4e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 281736 AGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCA 281795 || || ||||| ||||| | ||||| || ||||||||||||| ||| | || || Sbjct 13394 AGGTTGGTGAAAATATAACGAGCACTGGCCGAGTCTTTACCACCCATCAGACGCGTACCG 13453 Query 281796 AACTGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGG 281855 |||||||| ||| ||| || ||||| ||||| || ||| | ||||| |||| Sbjct 13454 AACTGACCAATCGGGGACAGTAGGTGGATGTTGTTGCTGCCAACGAAGTCCTGCGCCATA 13513 Query 281856 TTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACA 281915 || ||||| ||||| || | ||||||||| || ||||| ||| || | || Sbjct 13514 TTCACGATACAGCCCTGTAGACTTTGCTCACCGTGATGGTAGGCAGAGTGCTCAGACACG 13573 Query 281916 TAACCACTGAACTGTGCTACCTT 281938 || ||| |||||||| ||||| Sbjct 13574 TAGCCAGCCAACTGTGCCACCTT 13596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057731660890190