Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4890 163 3e-35 seq4811 141 1e-28 >seq4890 Length=10138 Score = 163 bits (180), Expect = 3e-35 Identities = 714/1125 (63%), Gaps = 6/1125 (1%) Strand=Plus/Minus Query 53450 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 53509 || || || |||||||| ||||| || | || | |||| | |||| || || | || Sbjct 5032 TAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCTTGCGGGCTCTCGAACGCGTAG 4973 Query 53510 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 53569 || | ||| || ||||| || || | || || || |||||||| || || | ||| | | Sbjct 4972 TTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCAATACCAATGGGACGATGGCGC 4913 Query 53570 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGG 53629 | || || | ||| |||| || |||||||||||| | || || | || |||||| Sbjct 4912 ATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAATTGACGTCGATGACCTTGTTGAGG 4853 Query 53630 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTATT 53689 || | || || |||||||| || | |||| | | || || || | | Sbjct 4852 TTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTTGTAGTCGAACACACCGTTTTCC 4793 Query 53690 ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 53749 |||||||| || || | ||| |||| || || || || ||||||| | || Sbjct 4792 ACAAACATAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTG 4733 Query 53750 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 53809 || | || | || ||| | || || | ||| || || || || || || || Sbjct 4732 TACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCCAAGTTCTGCTGGTTC 4673 Query 53810 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGAT 53869 ||| |||| || ||||| || || ||||| ||| || || |||||||| | Sbjct 4672 GACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCG 4613 Query 53870 TCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAG-ATTTGTATCTCTTTTCTCT 53928 |||| || || ||| | |||| || ||| | | | | || || || | Sbjct 4612 TCTAGGATAGCGAACCACAGCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCT-T 4554 Query 53929 TTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACA 53988 ||||| | ||||| ||||||||| || ||||| | || || |||||| Sbjct 4553 CTCGTACTTTTCATACAGAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAGGAGC 4494 Query 53989 TTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATC 54048 ||| | ||||| | ||| ||||| || | ||| ||||| ||||| |||||||| Sbjct 4493 TTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATC 4434 Query 54049 AGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTT 54108 ||| | ||| || || ||| | || | || | || ||| || || ||||| Sbjct 4433 AGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCTCATTACCGTGGTTCTT 4374 Query 54109 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAAC 54168 ||||| |||||| | | | || | |||||||| |||||||| || | | Sbjct 4373 ACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGA 4314 Query 54169 TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 54228 || || || ||| ||||| || | || | ||| |||| ||| | || | ||| Sbjct 4313 GCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAA 4254 Query 54229 CATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACG 54288 ||| || ||||| || || || | || || || ||| ||| ||||| | |||| || Sbjct 4253 CATGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGCG 4194 Query 54289 AATAT--TACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 54346 || | | | | |||| ||| || || || ||| ||||||||| | |||||| | Sbjct 4193 GATGTTGTGCATACTGAT--ACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGC 4136 Query 54347 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 54406 |||| || || || |||||||| ||| |||||| ||| | ||| ||||| | Sbjct 4135 TTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAACAAGAA 4076 Query 54407 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 54466 |||| || |||| || || || || || | ||||| | |||||||| || | Sbjct 4075 GACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAAC 4016 Query 54467 TTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCT 54526 || | || | || | ||||||||| | || || | || || | | || || ||| Sbjct 4015 TTCTGCGACATGAGCTCGTACGTCTCCAGTGCGGACTTGATGTCGCTCTTGTGGATGCCT 3956 Query 54527 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 54571 | || ||||||| | ||| ||||| || | || || | |||| Sbjct 3955 AACGCTACACGCAGAATCATTTGCTGCGGCCGCTCCACCACCTTG 3911 >seq4811 Length=93528 Score = 141 bits (156), Expect = 1e-28 Identities = 385/581 (66%), Gaps = 15/581 (3%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| || ||| | |||||||| | ||| || | ||||| || || | || Sbjct 47858 CAGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGA 47799 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 24253 |||||||| ||||| ||||| || |||||||| ||||| ||| || || || || ||||| Sbjct 47798 CCGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGA-GCAGAAAGAGCCCGAGAAGAA 47740 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG-----CGCTG-TC 24307 || ||||| || || || || || | || | || || || ||| | || Sbjct 47739 GATGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAGGATACACGCGGGTC 47680 Query 24308 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 | | |||||| | ||||| | |||||||| | |||||||| || ||||| || || Sbjct 47679 --GCA-CCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGC 47623 Query 24368 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 24427 | | ||||| || || || | || || | || || ||||| | || || Sbjct 47622 ACGCAGGAGATGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTA 47563 Query 24428 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 24487 | ||||| |||||||| |||||||| || || || || ||||| || | |||||||| Sbjct 47562 GACCTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGG 47503 Query 24488 AATCTGTACTTCTATACAAAATCGTTCT--GCTAAATTTTCATTCACTATTCCGTCACTG 24545 | ||| ||||| | | || |||| || || || || ||||| || ||||||||| Sbjct 47502 CACCTGCACTTCGTTGCTGAA--GTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTG 47445 Query 24546 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 24605 ||||| || || || | || || || || || | | |||| || || || || Sbjct 47444 GCTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTTGCTC 47385 Query 24606 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 24665 || || |||| || | | || | || || | ||||| || || ||||| || Sbjct 47384 CAGTCCTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCT 47325 Query 24666 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAA 24706 || || ||||| | ||| | || || | ||||| || || Sbjct 47324 TTCTTGTACATCTGCCACACTTCGTGTTCCTGAATGGGGAA 47284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593671037184240