Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq3105 100 2e-16 seq4260 96.9 3e-15 seq1938 93.3 4e-14 seq4261 82.4 6e-11 >seq3105 Length=35891 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| |||| || |||||||| || ||||| ||||||| | Sbjct 16566 CCACCACGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 16625 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || ||||||| ||||| ||||| || | || || | ||||||||| || Sbjct 16626 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 16685 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| || || || || || | | | | | || |||||| Sbjct 16686 ATTCCCTCCTTGTCCTGAATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACG 16745 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | || ||||||||||| || | || ||||| || || |||||||| Sbjct 16746 TCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTT 16795 >seq4260 Length=9660 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 |||||| || ||||| | ||||||| || | || |||||||| || ||||| ||||| Sbjct 9505 GTTTCCGCCACGCAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTC 9564 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 ||| || || ||||||||||||| ||||| || | || | | ||||||||| Sbjct 9565 GCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGG 9624 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCAC 21100 || | |||||||||||| ||||||||| || || Sbjct 9625 CGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTGAC 9660 >seq1938 Length=18534 Score = 93.3 bits (102), Expect = 4e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 |||||| | ||||||| ||||| ||||| || | || || | ||||||||| || Sbjct 6 CAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 65 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | |||||||||||| ||||| || ||||| | | ||| | || |||||| Sbjct 66 AATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 125 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | |||||||||||||||||| ||||| || || || || ||||| || Sbjct 126 GTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCATCTT 176 >seq4261 Length=68810 Score = 82.4 bits (90), Expect = 6e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 21021 TCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTG 21080 ||||||||||| ||||| || | || | | ||||||||| || | |||||||||| Sbjct 1 TCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTG 60 Query 21081 TCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATG 21140 || ||||||||| || || | | ||| | || |||||| |||| || || Sbjct 61 TCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATC 120 Query 21141 GTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 ||||||||||| || || || || || || ||||| |||| Sbjct 121 GTCTTGCCGGTCAAGGTCTTCACGAAAATCTGCATCTTGA 160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422224138367108