Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq4143 111 3e-19 seq4811 109 1e-18 seq4898 91.5 3e-13 >seq4143 Length=54860 Score = 111 bits (122), Expect = 3e-19 Identities = 259/383 (68%), Gaps = 12/383 (3%) Strand=Plus/Minus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || || || ||||| ||| |||| ||||| || || ||||||||||| || ||| |||| Sbjct 51894 CTACCCCACTTGCTGTTCTACGGACCTCCAGGTACTGGCAAGACGTCCACGATCGTGGCT 51835 Query 254061 CT--GGCCCGAACCCTGTTGGGC--GAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAA 254116 | ||| | ||| || |||| | || || || | ||| | || |||||||| Sbjct 51834 GTGGGGCGCCAACTCT-TTGGCCCGGACTTCCGCAAGAACGGCCGCTTCCTGGAGCTGAA 51776 Query 254117 CGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGAT 254176 ||| || || || || || | | || || ||||| ||| |||||| ||| || || Sbjct 51775 CGCGTCGGATGACCGAGGTATCAAGGTGGTACGCGAGAAGGTCAAGAGCTTCGCCCAG-G 51717 Query 254177 GTCGATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGC 254236 || | | || ||| |||| ||||| || || || | | || || ||||| Sbjct 51716 GTGCCATCAGCAGTGCCA--GCGGCCTACCGCCCTTTAAAATCATCGTACTCGATGAGGC 51659 Query 254237 GGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGT 254296 || ||||||||| ||||||||| || || || || || | |||||||| | ||| Sbjct 51658 CGATTCCATGACGGGCGACGCGCAATCTGCGCTGCGTCGCATGATGGAGAATTATTCCAA 51599 Query 254297 TGTGACGCGTTTTTGCCTGGTGTGCAACTACGT--GTCGAAGATCATCGCCCCGCTGGCT 254354 || || || |||||||| | || |||||||| |||| ||||| | || |||| Sbjct 51598 GGTCACTCGCTTTTGCCTCATCTGTAACTACGTGAGTCG--CATCATTGAGCCTGTGGCC 51541 Query 254355 TCTCGGTGCGCCAAGTTTCGATT 254377 || || || ||||| || || || Sbjct 51540 TCGCGTTGTGCCAAATTCCGCTT 51518 >seq4811 Length=93528 Score = 109 bits (120), Expect = 1e-18 Identities = 108/138 (78%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 157197 AAAAGTCCGCATCCAAAC--AAAACTGCTGCTTCTCACGTTCGAGCAAAACCCCGGGCTT 157254 ||||||||||||||| | ||||| ||||| |||| ||| ||| |||| ||| Sbjct 48205 AAAAGTCCGCATCCAGAGTGAAAAC--CTGCTCCTCAGCGGCGACACCAACGCCGGCCTT 48148 Query 157255 GCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTC 157314 | ||||||| |||| | ||||| |||||||||||||| || |||||||| |||||||| Sbjct 48147 GGAGTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATCATGTC 48088 Query 157315 CATCCACTCGAATGGGTT 157332 |||||| || || ||||| Sbjct 48087 CATCCAGTCAAAAGGGTT 48070 >seq4898 Length=18774 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 115414 CTCTGAATCGGTTCGATGATTTTGGTGGAGTTGTTGCAGACTATGATGAACCGCGTCGTG 115473 |||||||| || || ||||| |||||||||||||||||| | | ||| |||||||| Sbjct 14778 CTCTGAATGGGCTCAATGATCTTGGTGGAGTTGTTGCAGGCCAATGCGAATCGCGTCGTT 14837 Query 115474 CTCGAGTAAACATCCATGATCCGTCGCAGCGCCTGGAAAGCACCAGGTGTCATCGAGTCT 115533 |||| | | ||||| | ||||| || ||||| || ||| |||||| ||||| Sbjct 14838 GCCGAGAAGATCTCCATAGTACGTCGTAGAGCCTGCTGGGCTGCAGCTGTCATTGAGTCG 14897 Query 115534 GCCTCGTCGAGAACGACAATCTT 115556 |||||||| | | ||| ||||| Sbjct 14898 GCCTCGTCCAATATGACGATCTT 14920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073672669253184