Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq3105 125 6e-24 seq2993 120 2e-22 seq4260 98.7 8e-16 seq4261 89.7 4e-13 >seq3105 Length=35891 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| || ||||||||| ||||||||||| ||| ||| |||| || Sbjct 16584 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCGTCCTCG 16643 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| ||||| ||||| || || | |||||||||||| | Sbjct 16644 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGA 16703 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||||| || | | ||||||| |||||| || | || || |||||| Sbjct 16704 ATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTG 16763 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||||| || ||||| || || || ||||| || Sbjct 16764 CCCGTAAGGGTCTTGACGAAAATCTGCATTTT 16795 >seq2993 Length=38503 Score = 120 bits (132), Expect = 2e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 ||||||| ||||||||||| || ||| |||| || || || || |||||||| | Sbjct 7299 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 7358 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 ||| ||||| ||||| || || | |||||||||||| ||||| ||||| || Sbjct 7359 TCAGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 7418 Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326 | | ||||||| |||||| || | || || ||||||||||||| |||||||||| Sbjct 7419 CAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAA 7478 Query 45327 AGATTTGCATG 45337 |||| |||||| Sbjct 7479 AGATCTGCATG 7489 >seq4260 Length=9660 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| |||||||||||| |||| ||| |||| ||| Sbjct 9527 ACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCC 9586 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| ||||| ||||| ||||| || || | || ||||||||| Sbjct 9587 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGG 9646 Query 45248 ATTTTTTGCTTAAC 45261 || |||||||| || Sbjct 9647 ATCTTTTGCTTGAC 9660 >seq4261 Length=68810 Score = 89.7 bits (98), Expect = 4e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || ||||| || || || ||||| ||||| ||||| ||||| || || | || |||||| Sbjct 1 TCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTG 60 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 ||| || |||||||| || | | |||| | |||||| |||| || ||| Sbjct 61 TCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATC 120 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343 |||||||| |||| |||||||| || || ||||| ||| || Sbjct 121 GTCTTGCCGGTCAAGGTCTTCACGAAAATCTGCATCTTGACT 162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395042395548073