Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4890 289 3e-73 seq3105 138 1e-27 seq1938 120 3e-22 seq4261 118 9e-22 seq2993 113 4e-20 seq4260 95.1 1e-14 >seq4890 Length=10138 Score = 289 bits (320), Expect = 3e-73 Identities = 1215/1896 (64%), Gaps = 45/1896 (2%) Strand=Plus/Minus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 ||||||||| || ||||| || |||| || ||| ||| | || |||||||| Sbjct 5690 CTTGTCCACAGTGAACTGGATAGCGTCGGCTTTCGGACGTCCGCGCATGTAGTACATGCC 5631 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224 ||||| || ||| ||||||| |||||||| || || ||||||| || | | |||| Sbjct 5630 GGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGTCAGCTTACTGATAGTCGG 5571 Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284 | | |||| | || |||||||||||||| |||| | || || || || || | Sbjct 5570 GTCGGCGATGTGGATGTTCAACGACTGACTCTGGCAGATATAAGCGCCACGGTCAGCCGA 5511 Query 22285 CATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTC 22344 || | | | | | | || ||||| || ||||||||| | | | | || Sbjct 5510 CAGGTCCAGAACAGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCCTTAACATC 5451 Query 22345 TAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTT-TAA 22403 ||| || | || | |||| || || || || | | ||| ||| || Sbjct 5450 ATCCGGAATGTCCTTGACCTTCTGCACAGAGCCACCATCATTCAGAATCTGATTACGTAC 5391 Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCA-CT 22462 | ||| ||| | |||| || | | || || | ||||| ||| || | | Sbjct 5390 TTCCGGCGT-CCAAATGCCGAGCTCGATAAGCTCCTTCATCAGATACTTGTTAACGATCG 5332 Query 22463 TGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGAT 22522 |||| ||| || | ||| || || || | ||| |||||||| ||| | || |||| ||| Sbjct 5331 TGAA-CTCACCAGCCAACACACGACGGTTGTACATGTTGGACGTGTAAGGCTCGATAGAC 5273 Query 22523 TCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAG 22582 || ||||| ||||| |||||||| || || || |||||||| || || | ||| |||||| Sbjct 5272 TCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATGGGTGCAACCAGCAGCGAG 5213 Query 22583 TTTCTCAAGCCGTGCTT--TGAAATTTTACTCTTGAGCATCGACCAGTCCCA-----CAG 22635 || | | ||||| || ||| | | | | | || | ||||| ||| ||| Sbjct 5212 TTACGGAGACCGTGTTTAATGACGTCATCTTTTAGTGCGGC--CCAGTTCCAAAGCCCAG 5155 Query 22636 ATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCT 22695 || || || || || | ||||||| ||| | || || | || ||| ||||| Sbjct 5154 AT--GAAGGTGTGAC---GCCCCACATGTCGAACTGGAAGATACCCTTACTGGCCGGAGA 5100 Query 22696 GCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCT-CGCCTCCAACG 22754 ||| | | |||| ||||| ||||| || || ||||| || || | || ||||| | Sbjct 5099 GCCCTGGAACGTCTCGTAAGGACCCAATTCCGTGGCAATCTC-CATCGACGTCTCCATGG 5041 Query 22755 CGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCG-GCGACGCTTTCG 22813 | | | || || ||||||||||| |||||||||||||| || ||| ||| ||| Sbjct 5040 CAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCTTGCGG-GCTCTCG 4982 Query 22814 TACGGCATACG-CATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGG 22872 ||| | || ||| | | |||||| ||||||| |||||| ||||| ||||| || || Sbjct 4981 AACG-CGTAGTTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCAATACCAATGGG 4923 Query 22873 TCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGT 22932 || | || || ||| ||||| | | |||||| |||| ||||| Sbjct 4922 ACGATGGCGCATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAATTGACGTCGATGAC 4863 Query 22933 TCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAAC 22992 |||| | ||| | || | | || | | ||||| | || Sbjct 4862 CTTGTTGAGGTTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTTGTAGTCGAACAC 4803 Query 22993 GCCCGATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTC 23052 || || | |||||| | | || | || || | ||||| || |||||||| Sbjct 4802 ACCGTTTT---CCACAAACATAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTC 4746 Query 23053 GTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAA 23112 || ||||||||||| | | |||| |||| ||||| | ||||| ||||| Sbjct 4745 ATCGGGTGACGTGTACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCCAA 4686 Query 23113 ATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGT 23172 || |||||| || || || | ||||||||||||||| | ||| ||||| Sbjct 4685 GTTCTGCTGGTTCGACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGT 4626 Query 23173 CTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTA 23232 ||| | ||| | || | ||| || ||||| |||||||| | ||| ||| Sbjct 4625 CTCAATCTGAGCGTCTAGGATAGCGAACCACAGCTGCTGAGCGTTGATT-GTCTTACGCG 4567 Query 23233 CCTG-CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGG 23291 | | ||||| | ||||||||||| |||| || ||||| || | || | || ||| Sbjct 4566 CACGTCCTTCCTTCTCGTACTTTTCATACAGAGCTTCAAACTCATCGCCCCAGCACTCGT 4507 Query 23292 CCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTT---TCAACGC 23348 ||| || || | || | ||||| | | ||||||| | | |||| || || | Sbjct 4506 ACAGACCAGGAGCTTCGTTGGGACAGAACAAACTCCACTT---GCCATTGGCCTCCACTC 4450 Query 23349 GTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCT 23408 |||| || ||||| || | ||| || ||||| |||| ||||||||||| | || Sbjct 4449 TCTTCATGAAGAGATCAGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCT 4390 Query 23409 CTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGA 23468 | || ||| |||||| || ||||| || || |||||||| || ||||||||||| | Sbjct 4389 CATTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCA 4330 Query 23469 GGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGT 23528 ||| | || |||| |||| | |||| |||||||| || || || || ||||||| Sbjct 4329 AGTAGATAGCGAACGAGCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGT 4270 Query 23529 TGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACAC 23588 ||| |||| | | ||| || | | ||||| || | |||| | || ||| | Sbjct 4269 CGTTAAACACACGCAACATGGGGATAATGCCGTTAGAGGAGCCG--TTCG--TGCCGCGG 4214 Query 23589 TCGAACCTTTT----GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTC 23644 | | || || || || | |||||| | || ||| || || || || |||| Sbjct 4213 ATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTGATACCGATACCGCCCGCCCATTTA 4154 Query 23645 GATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTC 23704 || || |||||||| || || |||||||| |||||||| || ||| || | | Sbjct 4153 GAGATACAGGCGCATTGCTTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATA 4094 Query 23705 GCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGG 23764 || | | |||||| ||||||| || | ||||| |||| ||| || || ||| Sbjct 4093 GCCAATAGGAAACAAGAAGACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGG 4034 Query 23765 CTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATG 23824 |||||||||| ||| | | |||||| || | |||||| || | |||| | ||| Sbjct 4033 GTGGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTACGTCTCCAGTGCGGACTTGATG 3974 Query 23825 TC-CTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGT 23883 || |||| ||| || || | || || |||| ||||| | || || | ||| ||| Sbjct 3973 TCGCTCT-TGTGGATGCCTAACGCTACACGCAGAATCATTTGCTGCGGCCGCTCCACCAC 3915 Query 23884 GACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATA 23943 ||| || | ||| || || || | | ||| || || || || ||||| || Sbjct 3914 CTTGCCATTCACGCGGAAGAGGTAGCCGCGCTCGAGCGTCTTGAAGCCGAAGTAGTCGTA 3855 Query 23944 GTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979 | ||||| || ||||| | |||||||| ||||| Sbjct 3854 CTCGAAGTCGCGGTCGTGGATGATGGCCGAGTTCAA 3819 >seq3105 Length=35891 Score = 138 bits (152), Expect = 1e-27 Identities = 176/242 (73%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || ||||| || ||||| ||||||| || ||| Sbjct 16795 AAAATGCAGATTTTCGTCAAGACCCTTACGGGCAAGACCATCACGCTCGACGTGGAGCCG 16736 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || ||||| | || | ||||| |||| ||| ||||||||| || | ||||| ||| Sbjct 16735 TCGGACAGCATTGACAATGTCAAGCAGAAAATTCAGGACAAGGAGGGAATCCCGCCTGAC 16676 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || ||||| ||||| ||| | || ||| ||| || || || Sbjct 16675 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTGTCGGACTAC 16616 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAG 31425 ||||| || || || ||||| || || ||||| || | ||| | || ||| ||||| Sbjct 16615 AACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGTCTGCGTGGTGGTGGCAAGAAG 16556 Query 31426 CG 31427 || Sbjct 16555 CG 16554 >seq1938 Length=18534 Score = 120 bits (132), Expect = 3e-22 Identities = 122/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| |||| ||||| || || ||| ||||||| || ||| Sbjct 176 AAGATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACCCTCGACGTGGAGCCG 117 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || ||| |||| | || || |||| || ||||||||||||| | ||||| ||| Sbjct 116 TCGGACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGAC 57 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||||||| || ||||||||||| ||| | || ||| Sbjct 56 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGAC 18 >seq4261 Length=68810 Score = 118 bits (130), Expect = 9e-22 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| |||| ||||| |||||||| | ||||| || || Sbjct 158 AAGATGCAGATTTTCGTGAAGACCTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCT 99 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || ||| |||| | ||||| || | || ||||||||||||| | ||||| ||| Sbjct 98 TCGGACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGAC 39 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||| | || ||||||||||| ||| |||| || Sbjct 38 CAGCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGA 1 >seq2993 Length=38503 Score = 113 bits (124), Expect = 4e-20 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || || || ||||| |||| ||||| || ||||| ||||||| || || Sbjct 7492 AATCATGCAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACGCTCGACGTGGAGCC 7433 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||| ||||| | || | ||||| |||| ||| ||||||||| || | ||||| || Sbjct 7432 GTCGGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATCCCGCCTGA 7373 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||||| || || ||||| ||||| ||| | || ||| Sbjct 7372 CCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGAC 7333 >seq4260 Length=9660 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||||||||||||| | ||||| |||||||||||| | || ||||||||||| ||| |||| Sbjct 9643 GGACAAGGAAGGCATCCCGCCTGACCAGCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGA 9584 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || ||||||| || ||||| || || || || || || || ||||| || Sbjct 9583 GGACGGCCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCTACACTCCACCTGGTGCT 9524 Query 31405 TAGACTGAGGGGCGG 31419 | ||| | ||||| Sbjct 9523 GCGTCTGCGTGGCGG 9509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445728437418960