Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4890 185 1e-41 seq4811 150 2e-31 >seq4890 Length=10138 Score = 185 bits (204), Expect = 1e-41 Identities = 723/1127 (64%), Gaps = 10/1127 (1%) Strand=Plus/Minus Query 71443 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 71502 || || || ||||| || ||||| || | || | |||| |||||| || || | || Sbjct 5032 TAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCTTGCGGGCTCTCGAACGCGTAG 4973 Query 71503 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTC 71562 || | ||| || ||||| || || | || || ||||||||||| || || | || | | Sbjct 4972 TTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCAATACCAATGGGACGATGGCGC 4913 Query 71563 TTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 71622 | || || | ||| |||| || |||||||||||| | || || | || ||||| Sbjct 4912 ATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAATTGACGTCGATGACCTTGTTGAGG 4853 Query 71623 TTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTATT 71682 || | || || |||||||| || | ||| | | || || || | | Sbjct 4852 TTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTTGTAGTCGAACACACCGTTTTCC 4793 Query 71683 ACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCA 71742 ||||||| || || ||||| |||| || || || || ||||||| | | Sbjct 4792 ACAAACATAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTG 4733 Query 71743 TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 71802 || | || | ||| ||| | || || | ||| || || || || || || || Sbjct 4732 TACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCCAAGTTCTGCTGGTTC 4673 Query 71803 CTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 71862 ||| |||| || ||||| || || || || || || || |||||||||| Sbjct 4672 GACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCG 4613 Query 71863 TCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATATT-CTTGTATCTCTTTTCTC 71920 |||| || || ||| | | || |||| || ||| | || | | | || || || Sbjct 4612 TCTAGGATAGCGAACCACAGCTGCT-GAGCGTTGATTGTCTTACGCGCACGTCCTTCCT- 4555 Query 71921 TTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGA 71979 | ||||| | | ||| | ||| ||||| || ||||| ||| | || | |||||| Sbjct 4554 TCTCGTACTTTTCATACAGAGCTTCAAACTCATCGCCCCA-GCACTCGTACAGACCAGGA 4496 Query 71980 CATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGA 72039 ||| || ||||| | ||| ||||| |||| | | |||| ||||| |||||| Sbjct 4495 GCTTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGA 4436 Query 72040 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 72099 ||||| | ||| || || ||| | || | || | ||| ||| || || ||| Sbjct 4435 TCAGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCTCATTACCGTGGTTC 4376 Query 72100 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 72159 || ||||| |||||| | | | || | |||||||| |||||||| || || | Sbjct 4375 TTACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAAC 4316 Query 72160 ACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 72219 ||| || || ||| ||||| || | || | ||| |||| ||| | || | | Sbjct 4315 GAGCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGC 4256 Query 72220 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 72279 ||||| || ||||| || || || | || || || ||| ||| ||||| | |||| Sbjct 4255 AACATGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCG 4196 Query 72280 CGAATAT--TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 72337 || || | ||| | |||| ||| || || || ||| ||||||||| | |||||| Sbjct 4195 CGGATGTTGTGCATACTGAT--ACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATT 4138 Query 72338 GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGC 72397 | |||| || || || |||||||| ||| |||||| ||| | ||| ||||| Sbjct 4137 GCTTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAACAAG 4078 Query 72398 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 72457 ||||| || |||| || || || || || | ||||| | |||||||| || Sbjct 4077 AAGACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGA 4018 Query 72458 ATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTC 72517 | || | |||| || | ||||||||| | || || | || || | | || || | Sbjct 4017 ACTTCTGCGACATGAGCTCGTACGTCTCCAGTGCGGACTTGATGTCGCTCTTGTGGATGC 3958 Query 72518 CTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTG 72564 ||| ||| ||||||| | ||| ||||| || | || || | |||| Sbjct 3957 CTAACGCTACACGCAGAATCATTTGCTGCGGCCGCTCCACCACCTTG 3911 >seq4811 Length=93528 Score = 150 bits (166), Expect = 2e-31 Identities = 387/581 (67%), Gaps = 15/581 (3%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| || ||||| ||||| || | ||| || | ||||| || || | || Sbjct 47858 CAGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGA 47799 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183 |||||||| ||||| ||||| || |||||||| || || ||| || || || || ||||| Sbjct 47798 CCGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGA-GCAGAAAGAGCCCGAGAAGAA 47740 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACT---GTC 42237 ||| ||||| || || || || || | || | ||| || || ||| ||| Sbjct 47739 GATGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAGGATACACGCGGGTC 47680 Query 42238 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 | | |||||| | ||||| | |||||||| | |||||||| || || || ||||| Sbjct 47679 --GCA-CCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGC 47623 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 | | ||||| || || || | || || | || || || || | || || Sbjct 47622 ACGCAGGAGATGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTA 47563 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 | || || |||||||| |||||||| ||||| || || ||||| || | ||||||| Sbjct 47562 GACCTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGG 47503 Query 42418 AACCTGTACTTCTGTACAAAATCGTTCA--GCTAAATTTTCGTTCACTATTCCGTCACTG 42475 ||||| ||||| | | || ||||| || || || |||||||| || ||||||||| Sbjct 47502 CACCTGCACTTCGTTGCTGAA--GTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTG 47445 Query 42476 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTC 42535 ||||| || || || | || || || || || | | |||| || | || || Sbjct 47444 GCTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTTGCTC 47385 Query 42536 CAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 || || |||| || | | || | || || ||||||| || || || || || Sbjct 47384 CAGTCCTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCT 47325 Query 42596 TTTTTATACATATTCCAGATATCATGATATTGAATTGGGAA 42636 || || ||||| | ||| | || || | ||||| ||||| Sbjct 47324 TTCTTGTACATCTGCCACACTTCGTGTTCCTGAATGGGGAA 47284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671082044107880