Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2076 168 1e-37 seq1976 145 1e-30 seq1970 80.6 4e-11 >seq2076 Length=94050 Score = 168 bits (186), Expect = 1e-37 Identities = 183/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 73020 CGCTAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCTAT 72961 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || |||||||| || ||||||||| ||||||| | |||| || |||| Sbjct 72960 CCGTCGTCTCGCACGTCGTGGCGGTGTCAAGCGTATCTCTGGCCTCATCTACGAGGAGAC 72901 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | |||||| ||| ||| |||| || | || ||| || || Sbjct 72900 CCGCGGTGTCCTCAAGGTGTTCCTCGAGAACGTCATCCGCGACTCGGTCACCTACACGGA 72841 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| ||||| || || || ||||||| |||| || || | || ||||| || Sbjct 72840 GCACGCTCGCCGTAAAACCGTGACGGCCATGGACGTCGTGTACGCTCTTAAGCGTCAGGG 72781 Query 16672 CCG 16674 ||| Sbjct 72780 CCG 72778 >seq1976 Length=140312 Score = 145 bits (160), Expect = 1e-30 Identities = 188/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| |||| |||||| || |||||||| || || |||||||| || ||| Sbjct 131939 GCCAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGCATTACCAAGCCCGCCATC 131998 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || ||||||||||| || |||||| |||| || | ||||||| |||| Sbjct 131999 CGTCGTCTCGCACGTCGTGGTGGTGTGAAGCGTATCTCCGGCCTCATCTATGAGGAGACC 132058 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | ||| | ||||| ||| ||| |||| || || || ||| || ||| Sbjct 132059 CGCGGTGTCCTCAAGGTGTTCCTTGAGAACGTCATCCGCGACTCTGTCACCTACACTGAG 132118 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| || || || ||||||| | || || || | || ||||| ||| Sbjct 132119 CACGCCCGCCGTAAAACCGTGACGGCCATGGACGTTGTGTACGCTCTCAAGCGTCAGGGC 132178 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | |||| || || || Sbjct 132179 CGCACCCTTTACGGCTTCGG 132198 >seq1970 Length=7656 Score = 80.6 bits (88), Expect = 4e-11 Identities = 162/238 (68%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 16438 GCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTC 16496 |||||||||| |||| ||||||||| ||||| ||||| ||||| |||||||| || || | Sbjct 407 GCGTCATCGCAAGAT-TCTTCGAGACAACATACAAGGCATCACTAAGCCAGCGATTCGAC 465 Query 16497 GTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTG 16556 | || |||||||| | ||| || || |||| | |||||| | | |||| || | Sbjct 466 GCCTTGCTCGTCGGGCTGGTGTGGTTCGCATCTCCGTCTTGGTCCACCACGAGACGCGCG 525 Query 16557 ATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACG 16616 || ||| || || | || | || || || || || |||| | ||||||| Sbjct 526 CAGTGCTGAGGACATTTTTGTCGAGTGCCATTCAAGACGCGATCACCTATTCGGAGCACG 585 Query 16617 CTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 | || ||||| |||| ||||| || | || || | ||||| ||||| || Sbjct 586 GACACCGCAAGACGATCACAGGAATGGACGTCATTTACGCGCTCAAACGCCAAGGTCG 643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79068970826409