Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq4890 318 2e-81 seq2571 96.9 9e-15 >seq4890 Length=10138 Score = 318 bits (352), Expect = 2e-81 Identities = 1063/1639 (65%), Gaps = 55/1639 (3%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 |||||||||||||| || || | | ||| || || || | ||| ||| |||||||| Sbjct 4020 TTCACGCACGCCACCCCTACTCTCTTCAACGCCGGCACGCCACGTCCTCAGTTGTCTTCT 4079 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || || || | ||| |||| || || || ||||| || | ||||| || ||| | Sbjct 4080 TGTTTCCTATTGGCTATGCAGGATGACTCTATTGAGGGCATTTACGACACCCTAAAGCAA 4139 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || || ||| || || || ||||| || ||| | || ||||| | || || Sbjct 4140 TGCGCCTGTATCTCTAAATGGGCGGGCGGTATCGGTATCAGTATGCACAACATCCGCGCC 4199 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 ||||| ||||| |||||||| || | ||| || || | | |||||| | ||| Sbjct 4200 ACTAACAGCTACATCCGCGGCACGAACGGCTCCTCTAACGGCATTATCCCCATGTTGCGT 4259 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 |||||| || | || || | || || |||||||| ||||| |||||||| || |||| Sbjct 4260 GTGTTTAACGACACGGCTCGCTATGTGGACCAGGGCGGAGGTAAGCGCAAGGGCTCGTTC 4319 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 ||||| || | ||||| || ||||| | || ||||| || || || || || ||| Sbjct 4320 GCTATCTACTTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGATCTGCGTAAGAAC 4379 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||| || || || || |||| || || || ||||| |||| | Sbjct 4380 CACGGTAATGAGCTGCACCGCGCCCGCGACTTGTTTTACGCGCTGTGGGTGCCTGATCTC 4439 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA 364026 || |||||| | |||||||| | || ||| | || || || ||||| ||| Sbjct 4440 TTCATGAAGAGAGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAAGCTCCT 4499 Query 364027 GGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAG 364086 ||||| | ||| ||||| || || | || ||||| || |||||||| || ||| Sbjct 4500 GGTCTGTACGAGTGCTGGGGCGATGAGTTTGAAGCTCTGTATGAAAAGTACGAGAAGGAA 4559 Query 364087 GGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAG 364146 ||| || ||||||||||| ||| ||| |||| ||||| || ||| | || | ||| Sbjct 4560 GGACGTGCGCGTAAGACAATCAACGCTCAGCAGCTGTGGTTCGCTATCCTAGACGCTCAG 4619 Query 364147 ATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAG 364206 |||||||| ||| |||| ||| | ||||| || | ||||||||||| |||||| Sbjct 4620 ATTGAGACGGGAGTGCCCTTCATGCTCTACAAGGACGCAGCTAACCGCAAGTCGAACCAG 4679 Query 364207 CAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCT 364266 ||| || | ||||| || | |||||| |||| ||| | || || ||||| | Sbjct 4680 CAGAACTTGGGTACGATCCGTTCCAGCAACTTATGCTGCGAAGTCATGGAGTACACGTCA 4739 Query 364267 CCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGAT 364326 ||||| ||| || || || ||| | ||||| | ||||| || |||||| || | Sbjct 4740 CCCGATGAGGTGGCAGTGTGCAACTTGGCGTCTGTGGCGCTGCCTATGTTTGTGGAAAAC 4799 Query 364327 GGTACTTTTGACCACCAGCATCTTTATGACGT----AACCT-ATCATGCTACTTGCAATC 364381 ||| || ||| || || || ||||| || || | |||| || |||| | Sbjct 4800 GGTGTGTTCGACTACAAGAGACTGTATGAGGTGGTCAAGGTGATCACGC-----GCAACC 4854 Query 364382 TCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CGAGCGTTCTAATATG 364440 || ||||||| |||||| ||||||||||| || | || || || | || || ||| Sbjct 4855 TCAACAAGGTCATCGACGTCAATTATTATCCTGTTGCAGAGGCTCGCAAG-TCCAACATG 4913 Query 364441 CGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAG 364500 || ||||| || |||||| |||| || ||||| || || || | || || | | || Sbjct 4914 CGCCATCGTCCCATTGGTATTGGCGTCCAGGGTCTGGCGGATGCGTTCATCCTCATGAAC 4973 Query 364501 ATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTAT 364560 || || || || | ||||||| | || ||| | ||||| || || || || Sbjct 4974 TACGCGTTCGAGAGCCCGCAAGCTCGTGAATTGAACAAGAACATCTTCGAGACGATCTAC 5033 Query 364561 TTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTAT 364620 ||||| || ||| | ||| ||| | ||| || | | | |||| Sbjct 5034 TTTGCTGCCATGGAGACGTCG------ATGGAGATTGCCACGG---AATTGGGTCCTTAC 5084 Query 364621 GAGGGGTCCC----CTCTTTCGC-----AGGGAAAATTCCAGTTTGATCTATGGAATGTC 364671 ||| || || |||| || |||| | |||||||| || | ||| ||| Sbjct 5085 GAGACGTTCCAGGGCTCTCCGGCCAGTAAGGGTATCTTCCAGTTCGACATGTGGGGCGTC 5144 Query 364672 ACGC---CATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGT 364728 || | |||||| | |||||||||| | ||| |||| | || || ||| Sbjct 5145 ACACCTTCATCTGGGCTTTGGAACTGGGCCGCACTAAAAGATGACGTCATTAAACACGGT 5204 Query 364729 ACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGA 364788 || ||||| || | || |||||||| || || || || || |||||||| || Sbjct 5205 CTCCGTAACTCGCTGCTGGTTGCACCCATGCCGACAGCCTCCACGGCTCAGATCCTGGGC 5264 Query 364789 AACAACGAGTGCTTCGAACCGTTTACAAG--CAATCTTTATTCACGCCGGGTTCTTTCCG 364846 |||||||||| |||| || ||||| | ||| | || || || || | | | Sbjct 5265 AACAACGAGTCTATCGAGCC--TTACACGTCCAACATGTACAACCGTCGTGTGTTGGCTG 5322 Query 364847 GAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGG 364906 | || || || | ||||| ||||| || | ||||| ||| ||| | ||| | || Sbjct 5323 GTGAGTTCACGATCGTTAACAAGTATCTGATGAAGGAGCTTATCGAGCTCGGCATTTG-- 5380 Query 364907 GTGACAGCATGAAGAACTATATCA-----TCGCCGCTAATGGTTCTGTGCAGAACATTCC 364961 ||| || |||| || |||| | | | ||| ||||||||||| || Sbjct 5381 --GAC-GCCGGAAGTACGTAATCAGATTCTGAATGATGGTGGCTCTGTGCAGAA-GGTCA 5436 Query 364962 AGGA-TTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGC-GA 365019 |||| |||| || ||| | ||| | ||||| || || ||||| || || || || Sbjct 5437 AGGACATTCCGGATGATGTTAAGGAGAAGTACAAGACGGTGTGGGAGAT---CAAGCAGA 5493 Query 365020 A--CTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTA 365077 | || | | || || |||| || || || |||| |||||| ||||| |||||||| | Sbjct 5494 AGGCTGTTCTGGACCTGTCGGCTGACCGTGGCGCTTATATCTGCCAGAGTCAGTCGTTGA 5553 Query 365078 ACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGA 365137 || | ||| | | || || | ||||| || |||||||| || |||| |||| Sbjct 5554 ACATCCACATCGCCGACCCGACTATCAGTAAGCTGACGTCCATGCACTTTTACGCTTGGA 5613 Query 365138 AATCCGGTCTTAAGACAGG 365156 | || || ||||| || Sbjct 5614 AGAAGGGACTCAAGACCGG 5632 >seq2571 Length=74305 Score = 96.9 bits (106), Expect = 9e-15 Identities = 346/532 (65%), Gaps = 8/532 (2%) Strand=Plus/Plus Query 111359 CGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACT-TGCAGCAAAAA 111417 ||| || || |||||||||||| | ||| |||| ||| | ||| ||||||| ||| Sbjct 71655 CGAGGAGCTACTGTGGTTTATTAGTGGAGACACAAGTGCCCAC--ACTCTGCAGCAGAAA 71712 Query 111418 -ATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTC 111476 || | | |||||||| || |||||||| || || | ||| ||| || || Sbjct 71713 GATATTCATATTTGGGACGGCAATGGATCGCGCGAGTATCTGGATAGCCGAGGACTGCAG 71772 Query 111477 GACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCA 111536 || || | || || || ||||| |||||||| || || ||||| ||||||||||| Sbjct 71773 GATCGGGAGGTTGGAGACCTTGGACCGGTTTACGGCTTCCAGTGGCGTCACTTTGGTGCC 71832 Query 111537 GACTACAAAACCATGCACGACTCATATGATTCACAGGGAACTGATCAATTA-CAGAATGT 111595 | |||| |||||| | || | || || || || || |||| || Sbjct 71833 AAGTACACGGACATGCATGCAGACTACACTGGCCAAGGTGTGGACCAGCTAGCAGAG-GT 71891 Query 111596 CATTGATCAAATTAAGAAC-AACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACC 111654 ||| | ||| | | || || || ||| || || ||| | || || ||||||| Sbjct 71892 GATTCA-CAAGCTGCGTACGAATCCTACTGACCGACGGATTGTGCTGTCGGCGTGGAACC 71950 Query 111655 CAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTAC 111714 | | | | | ||||| || || || || || | | |||||||| || || Sbjct 71951 CGGCCGATCTCAACGAGATGGCCCTGCCGCCTTGCCACATGTTCTGCCAGTTCTACGTTG 72010 Query 111715 ACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTC 111774 | ||||| | || || || ||||| |||||||| || || || |||||||| || | Sbjct 72011 CCAACGGGGAATTATCGTGTCAGATGTACCAGCGATCGGCCGACATGGGTCTTGGAGTGC 72070 Query 111775 CGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCA 111834 | || || ||||| || ||||| || || || | | | || || | || || | Sbjct 72071 CTTTCAACATTGCCAGCTACGCGCTGCTGACACGACTGGTTGCACAAGTGACGGGACTAA 72130 Query 111835 AACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCA 111886 |||| || || ||||| ||||||||||| || || || || ||| ||||| Sbjct 72131 AACCTGGCGAGTTCATCCACGTTATCGGCGACGCACACGTGTACCTGAACCA 72182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303239828227766