Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3105 152 5e-32 seq4890 147 2e-30 seq4260 132 5e-26 seq1938 109 5e-19 seq2993 104 2e-17 seq4261 95.1 1e-14 >seq3105 Length=35891 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||||||| | || | |||||||||||| || |||||||| || | Sbjct 16566 CCACCACGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 16625 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 16626 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 16685 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||||||||||||| | || | | || | | ||| | | Sbjct 16686 ATTCCCTCCTTGTCCTGAATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACG 16745 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || || || || |||||||||||||| Sbjct 16746 TCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCAT 16792 >seq4890 Length=10138 Score = 147 bits (162), Expect = 2e-30 Identities = 719/1123 (64%), Gaps = 46/1123 (4%) Strand=Plus/Minus Query 145052 TACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTG 145111 |||| || |||| | ||||| || |||||||||||||| |||| ||| |||||| Sbjct 5347 TACTTGTTAACGATCGTGAACTCACCAGCCAACACACGACGGTTGTACATGTTGGACGTG 5288 Query 145112 AAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTAC 145171 | || || | ||||||||| ||||||||||| ||||| || | || || |||||| Sbjct 5287 TAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATGGGT 5228 Query 145172 GCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAA 145231 || |||| | || || || || ||||| || ||| ||| || ||||| | |||| Sbjct 5227 GCAACCAGCAGCGAGTTACGGAGACCGTGTTTAATGACGTCATCTTTTAGTGCGGCCCAG 5168 Query 145232 TCCCATAGC---GAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTG 145288 | ||| ||| || | || | ||| ||||||||||| |||| || || |||| ||| Sbjct 5167 TTCCAAAGCCCAGATGAAGGTGTGACGCCCCACATGTCGAACTGGAAGATACCCTTACTG 5108 Query 145289 GCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGT-TTTGGCGAGCTCGCAAC-TCG 145346 || || ||| || || | |||| | ||||| | |||| | ||| || | || Sbjct 5107 GCCGGAGAGCCCTGGAACGTCTCGTAA-GGACCCAATTCCGTGGCAATCTC-CATCGACG 5050 Query 145347 CCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGA--GCAGCATCGCTTC 145404 ||||| || | || || || |||||| || | | |||| | || | |||| Sbjct 5049 TCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGA--GCTTG 4992 Query 145405 ATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCAC 145464 ||||||| ||| | || || | || ||||| || || ||||| | || | Sbjct 4991 CGGGCTCTCGAACGCGTAGTTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCAAT 4932 Query 145465 GCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACG 145524 || ||||| ||||| ||||||| | | | ||| | | |||||| ||| Sbjct 4931 ACCAATGGGACGATGGCGCATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAATTGAC 4872 Query 145525 GTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAA 145584 |||||| | || || | ||| ||| | ||||| | | || | | | Sbjct 4871 GTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTTGTA 4812 Query 145585 GTCAAACCGAGCCTCGTCAACGACCACA--CAGCTATTGACGGCGATCGACGCCAAATTA 145642 ||| ||| | | | || || | || | |||| || | |||||||| || Sbjct 4811 GTCGAACACACCGTTTTCCACAAACATAGGCAGC--------GCCACAGACGCCAAGTTG 4760 Query 145643 CAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACA 145701 || |||||| ||| || || | || |||| | | || ||| ||| || ||||| | Sbjct 4759 CACACTGCCACCTCATCGGGTGACG-TGTACTCCATGACTTCGCAGCATAAGTTGCTGGA 4701 Query 145702 TTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCAT 145761 ||| || |||| || ||||| || || | ||| ||||||||||||||||| Sbjct 4700 ACGGATCGTACCCAAGTTCTGCTGGTTCGACTTGCGGTTAGCTGCGTCCTTGTAGAGCAT 4641 Query 145762 GTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATA--AAACGGTGCAAGTCCTGCGCA 145819 | | || | || ||||| | ||| | || | |||| ||| || | ||| || Sbjct 4640 GAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAAC--CACAGCTGCTGAGCG 4583 Query 145820 CGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTA--TTTCCTGTAGAGCTCCTCAAACG 145877 | || | || || || | ||||| |||| | |||||| |||||| Sbjct 4582 TTGATTGTCTTACGCGCACGTCCTTCCTTCTCGTACTTTTCATACAGAGCT--TCAAACT 4525 Query 145878 CGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGC 145937 | || |||| ||| |||| || ||| | ||||||||| | || ||| || Sbjct 4524 CATCGCCCCAGCACTCGTACAGACCAGGAGCTTCGTTGGGACAGAACAAACTCCACTTGC 4465 Query 145938 CGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC 145997 | ||||| | || | || ||| || | ||| ||||||||||||||||| | |||||||| Sbjct 4464 CATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCGTAAAACAAGTCGC 4405 Query 145998 --GCGCTTTGCAATCCTCAGCACCCATGTTTCGCTT---CAAATTAAGCACACT-ATAGA 146051 |||| |||| |||| ||| ||| ||| || || || | ||| | | Sbjct 4404 GGGCGCGGTGCA--GCTCATTACCGTGGTT---CTTACGCAGATCCAGGA-ACTCGAACA 4351 Query 146052 TGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCCACCCT 146108 ||| ||||||||||| || | |||| |||| | || || || || || |||| Sbjct 4350 CGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCTCCGCCCT 4291 Query 146109 GGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGG 146151 ||||||| | || || ||| |||||| || |||| |||||| Sbjct 4290 GGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGG 4248 >seq4260 Length=9660 Score = 132 bits (146), Expect = 5e-26 Identities = 120/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||||||||| | || | || |||||||| || |||||||| |||||| Sbjct 9509 CCGCCACGCAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 9568 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| |||||||||||||| || ||| Sbjct 9569 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 9628 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGA 131158 || ||||| ||||| ||| || ||||||| Sbjct 9629 ATGCCTTCCTTGTCCTGGATCTTTTGCTTGA 9659 >seq1938 Length=18534 Score = 109 bits (120), Expect = 5e-19 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121 ||||||| |||||| |||||| ||||||||||| ||| |||| | |||||||||||| Sbjct 1 TCGCTCAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCA 60 Query 131122 GGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGAC 131181 || || || ||||| ||||| || |||||||| | | || | | || | | | Sbjct 61 GGCGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGC 120 Query 131182 TCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||||| ||| || ||||| | || || ||||| |||||||| Sbjct 121 TCCACGTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCAT 173 >seq2993 Length=38503 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| || | ||||| |||||| ||||||||||| ||| ||| Sbjct 7299 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 7358 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | ||||||||||| || |||||||| || ||||| |||||||||||||| | | Sbjct 7359 TCAGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 7418 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | | || | | ||| | ||||| || | ||| || || || | || || || | Sbjct 7419 CAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAA 7478 Query 131225 AAATCTGCATGA 131236 | |||||||||| Sbjct 7479 AGATCTGCATGA 7490 >seq4261 Length=68810 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| ||||||||||| ||| |||| |||||||||||||| || ||||| ||||| ||| Sbjct 1 TCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTG 60 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||||||| | || | | || | | ||| | ||| | || | Sbjct 61 TCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATC 120 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || ||||| | || || |||||||||||||| Sbjct 121 GTCTTGCCGGTCAAGGTCTTCACGAAAATCTGCAT 155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471972602209920