Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4890 163 4e-35 seq4811 150 2e-31 >seq4890 Length=10138 Score = 163 bits (180), Expect = 4e-35 Identities = 716/1126 (64%), Gaps = 8/1126 (1%) Strand=Plus/Minus Query 62492 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAA 62551 || || || |||||||| ||||| || | || | |||| | |||| || || | || Sbjct 5032 TAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCTTGCGGGCTCTCGAACGCGTAG 4973 Query 62552 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62611 || | ||| || ||||| || || | || || || |||||||| || || | ||| | | Sbjct 4972 TTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCAATACCAATGGGACGATGGCGC 4913 Query 62612 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62671 | || || | ||| |||| || |||||||||||| | || || | || ||||| Sbjct 4912 ATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAATTGACGTCGATGACCTTGTTGAGG 4853 Query 62672 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT 62731 || | || || |||||||| || | |||| | | || || || | | Sbjct 4852 TTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTTGTAGTCGAACACACCGTTTTCC 4793 Query 62732 ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62791 |||||||| || || ||||| |||| || || || || ||||||| | || Sbjct 4792 ACAAACATAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTG 4733 Query 62792 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 62851 || | || | || ||| | || || | ||| || || || || || || || Sbjct 4732 TACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCCAAGTTCTGCTGGTTC 4673 Query 62852 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 62911 ||| |||| || ||||| || || ||||| || || || |||||||||| Sbjct 4672 GACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCG 4613 Query 62912 TCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAG-ATTTGTATCTCTTTTCTC 62969 |||| || || ||| | | || |||| || ||| | | | | || || || Sbjct 4612 TCTAGGATAGCGAACCACAGCTGCT-GAGCGTTGATTGTCTTACGCGCACGTCCTTCCT- 4555 Query 62970 TTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGAC 63029 | ||||| | ||||| ||| ||||| || ||||| | || ||| |||||| Sbjct 4554 TCTCGTACTTTTCATACAGAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAGGAG 4495 Query 63030 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 63089 ||| | ||||| | ||| ||||| || | ||| ||||| ||||| ||||||| Sbjct 4494 CTTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGAT 4435 Query 63090 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCT 63149 |||| | ||| || || ||| | || | || | || ||| || || |||| Sbjct 4434 CAGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCTCATTACCGTGGTTCT 4375 Query 63150 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 63209 | ||||| |||||| | | | || | |||||||| |||||||| || || | Sbjct 4374 TACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACG 4315 Query 63210 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 63269 || || || ||| ||||| || | || | ||| |||| ||| | || | || Sbjct 4314 AGCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCA 4255 Query 63270 ACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCAC 63329 |||| || ||||| || || || | || || || || ||| ||||| | |||| | Sbjct 4254 ACATGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGC 4195 Query 63330 GAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 63387 | || | | | | |||| ||| || || || ||| ||||||||| | |||||| | Sbjct 4194 GGATGTTGTGCATACTGAT--ACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTG 4137 Query 63388 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 |||| || || || |||||||| ||| |||||| ||| | ||| ||||| Sbjct 4136 CTTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAACAAGA 4077 Query 63448 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCA 63507 ||||| || |||| || || || || || | ||||| | ||||| || || | Sbjct 4076 AGACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAA 4017 Query 63508 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC 63567 || | || | || | ||||||||| | || || | || || | | || || || Sbjct 4016 CTTCTGCGACATGAGCTCGTACGTCTCCAGTGCGGACTTGATGTCGCTCTTGTGGATGCC 3957 Query 63568 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 63613 || || ||||||| | ||| ||||| || | || || | |||| Sbjct 3956 TAACGCTACACGCAGAATCATTTGCTGCGGCCGCTCCACCACCTTG 3911 >seq4811 Length=93528 Score = 150 bits (166), Expect = 2e-31 Identities = 387/581 (67%), Gaps = 15/581 (3%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| || ||| | |||||||| | ||| || | ||||| || || | || Sbjct 47858 CAGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGA 47799 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 32779 |||||||| ||||| ||||| || |||||||| ||||| ||| || || || || ||||| Sbjct 47798 CCGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGA-GCAGAAAGAGCCCGAGAAGAA 47740 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG-----CGCTG-TC 32833 || ||||| || || || || || | || | ||| || || ||| | || Sbjct 47739 GATGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAGGATACACGCGGGTC 47680 Query 32834 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893 | | |||||| | ||||| | |||||||| | |||||||| || ||||| || || Sbjct 47679 --GCA-CCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGC 47623 Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953 | | ||||| || || || | || || | || || ||||| | || || Sbjct 47622 ACGCAGGAGATGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTA 47563 Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGT 33013 | ||||| |||||||| |||||||| || || || || |||||||| | |||||||| Sbjct 47562 GACCTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGG 47503 Query 33014 AATCTGTACTTCTGTACAAAATCGTTCT--GCTAAATTTTCATTCACTATTCCGTCACTG 33071 | ||| ||||| | | || |||| || || || || ||||| || ||||||||| Sbjct 47502 CACCTGCACTTCGTTGCTGAA--GTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTG 47445 Query 33072 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 33131 ||||| || || || | || || || || || | | |||| || || || || Sbjct 47444 GCTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTTGCTC 47385 Query 33132 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191 || || |||| || | | || | || || | ||||| || || ||||| || Sbjct 47384 CAGTCCTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCT 47325 Query 33192 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAA 33232 || || ||||| | ||| | || || | ||||| || || Sbjct 47324 TTCTTGTACATCTGCCACACTTCGTGTTCCTGAATGGGGAA 47284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633578038314800