Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3370 208 2e-48 seq4811 123 5e-23 seq6376 104 5e-17 >seq3370 Length=25312 Score = 208 bits (230), Expect = 2e-48 Identities = 456/671 (68%), Gaps = 24/671 (4%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || ||| | || |||||||||||||||||||| |||| || |||| ||||| | | | Sbjct 14657 GTGGGTACCCTTTCGGGTGGTTGGAAGATGAAACTGGAGCTGGCTCGTGCCATGTTGCAG 14716 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 ||||| |||| || ||||||||||| || |||||| |||| || ||||| ||| Sbjct 14717 AAGGCCGACATCCTGCTTCTTGATGAGCCCACGAACCACTTGGATGTCAAGAACGTTGCC 14776 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875 ||||| | | |||||| || || ||| ||| ||| ||||| |||| || || |||||| Sbjct 14777 TGGCTGGAGAACTACCTGACGAGCCTGCCGAACGTTACTTCCATCATGGTGTCGCACGAC 14836 Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAG---CAAAATCTGAAG 279932 ||||||||||| || |||||| | |||||||||||| ||| | || |||||| Sbjct 14837 TCTGGCTTCCTCGACAACGTGTGTACCAACATCATTCACTACGAGACCCGTAAGCTGAAG 14896 Query 279933 CTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCC 279992 ||| |||| || ||||| || ||||||| || |||||||| ||| Sbjct 14897 ATCTACAAG------GGTAACCTCTCCAAGTTCGTGGAGCAGAAGCCTGAGGCCAAGGCC 14950 Query 279993 TACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAG 280052 ||||| || || || | | || ||||| ||||| ||||| || || || | Sbjct 14951 TACTACGAGCTCGAGTCGGAGAACGTCAAGTTCATCTTCCCCGAGCCTGGTTTCCTTGCT 15010 Query 280053 GGCATC-ACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCC 280111 | |||| | | ||| || || | ||||| || | || | || || Sbjct 15011 GACATCAAGAACAAGGGTAAGC-CCATCATTCGTCTGACCAACTGTTCGTACCAGTACCC 15069 Query 280112 CAATGGCCCCAA--CATC-TTCAGCAGTGTCAACTCGCAGGT-TTCTAT---GAACTCAC 280164 || |||||| | || ||| || || || | || | || | || | | Sbjct 15070 GGGTGCCCCCAAGCCGTCGATCAACAACATC-TCTGTGACGTGTGCTCTTTCGAGC---C 15125 Query 280165 GGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTG 280224 | || | ||| | |||||||| ||||| ||||||||||| || ||||| | ||||| | Sbjct 15126 GTATCGCTGTGCTGGGACCCAACGGTGCCGGTAAGTCTACGCTGATCAAGATGCTGACGG 15185 Query 280225 GCGAGACCCAGGCCACTGAGGGGTC-CGTTTGGAAGCATCCCAACATGCGGATGGCTTAC 280283 | || || | || || |||| || |||||||| || |||||| | || ||| Sbjct 15186 GTGAAGTGGAGCCGAC-CAGTGGTCAGGTGTGGAAGCACCCTTCCATGCGTTTCGCCTAC 15244 Query 280284 GTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATAC 280343 |||||||||||||||||||||||||| ||| ||||| || |||| | ||||| ||| Sbjct 15245 GTCGCTCAGCACGCTTTCCACCACATTGAGTCGCACCTTGATGAGACTGCCAACCAGTAC 15304 Query 280344 ATTCAGTGGCG 280354 || |||||||| Sbjct 15305 ATCCAGTGGCG 15315 >seq4811 Length=93528 Score = 123 bits (136), Expect = 5e-23 Identities = 541/848 (64%), Gaps = 11/848 (1%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||| || || | |||||| | |||||||| | ||||| |||| || ||||| | Sbjct 48125 TCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATCATGTCCATCCAGTCAAAAGGGTTCTTA 48066 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || | ||| ||||| ||||| | || | ||||| ||||| ||||| | Sbjct 48065 GCGTGGTAGATCTTGGACACACCAAGCGAGTAGAGCAGACGGTCAGCCACGAACTCAATG 48006 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGAT 251741 ||||| | ||| || |||||||||| ||||||| | ||| ||| | |||| | Sbjct 48005 TACTGGCACATGAGGGCAGAGTTCATACCAATCAGCTCCACAGGGAGC-GAGTCACGCAC 47947 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 || || | || | | || || || | || | | || | | | ||| Sbjct 47946 AAACTCGTGCTCAATCACCACAGCGTCACGAATGATCTCGTGTACACGGCTCTCTGGCAG 47887 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCG 251861 |||| | ||||||| ||||||| || | | || | ||||| |||||||| || Sbjct 47886 CTTGGTGACCAGCTTGGAGTACAAAAGGCAGGCGAAGTCCGTGTGCATGCCCTCGTCACG 47827 Query 251862 ACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAA 251921 |||||||| |||||| || | | ||| || ||||| | || || ||| | ||||| || Sbjct 47826 ACTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCATGAGGCCGCGCTTCTTTAGCCAAAA 47767 Query 251922 GATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCG 251981 ||| | ||| || || || ||||| | | || || ||| | | || | ||||| Sbjct 47766 GATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCTTCCACAGCAGCGAAAGCCAGCAGGCG 47707 Query 251982 CTCAGCAAACGACTTGTCCTGCGACAAGAACTTCT---GTGCCCATGCTGCCTTCTTTCC 252038 ||| | | || | ||| | || || ||||||| |||||||| Sbjct 47706 CTCCGGGTAGGAGGATACACGCGGGTCGCACCACTTGAGTGCCCAGTGAGCCTTCTTCGT 47647 Query 252039 AACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTCGAT 252098 || ||||| || || || ||| | |||| || | |||| |||||| ||| Sbjct 47646 GACACAAGGGATGGTCTCAATGGCACGCAGGAGATGGTCCTTCTCGATCGCGTCCTTGAT 47587 Query 252099 GAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTGGTA 252158 | || |||| || || ||||| | |||||| || ||| || || |||||| | Sbjct 47586 GTACGTGTCAATGAGCAGTGAGTAGACCTCCGAGTGAATGTTCTCAATGGCGATCTGGAA 47527 Query 252159 AGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGCAATGTT 252218 ||||||| ||| || || | ||||| || ||||| | || | ||| Sbjct 47526 GCCATAGAAGCAACGAGCCTCGGGCACCTGCACTTCGTTGCTGAAGTTCATGGCCAAGTT 47467 Query 252219 CTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAAGTGACG 252278 ||| |||| || || || ||| |||| |||||| | || | | |||||||||||| || Sbjct 47466 CTCGTTCACGATACCGTCACTGGCTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCG 47407 Query 252279 CTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAACTTCTTC 252338 ||| | ||| |||||||| | |||||| | ||| || || | || || Sbjct 47406 CTCGTTGTCCGTGAGCTTG---CTCCAGTCCTTGAGGTCGTGCACAAGGTCGAGCTCCTC 47350 Query 252339 CACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATCAGGGTACTTGA 252397 |||||||||| | || | | || ||||||||||| ||| |||| || | || | ||| Sbjct 47349 AGCCGTCCAGAAGGAGGCCTCGGCTTTCTTGTACATCTGC-CACACTTC-GTGTTCCTGA 47292 Query 252398 TTGGGAAA 252405 |||| || Sbjct 47291 ATGGGGAA 47284 >seq6376 Length=24334 Score = 104 bits (114), Expect = 5e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 218656 AAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAG 218715 ||||| || ||||| |||| || || || || |||| |||||||||||||||||| Sbjct 13596 AAGGTGGCACAGTTGGCTGGCTACGTGTCTGAGCACTCTGCCTACCATCACGGTGAGCAA 13537 Query 218716 AGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAAC 218775 ||||| ||||| || || ||||| ||||||| || ||||| |||||||| || Sbjct 13536 AGTCTACAGGGCTGTATCGTGAATATGGCGCAGGACTTCGTTGGCAGCAACAACATCCAC 13477 Query 218776 TTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGA 218825 | ||| ||| | |||||||| ||| | ||||| ||||||| || || Sbjct 13476 CTACTGTCCCCGATTGGTCAGTTCGGTACGCGTCTGATGGGTGGTAAAGA 13427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027747078519733