Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4811 288 2e-72 seq4890 239 8e-58 >seq4811 Length=93528 Score = 288 bits (318), Expect = 2e-72 Identities = 577/846 (68%), Gaps = 27/846 (3%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 ||||||||||| || || |||| |||||| || |||||| | ||||| | | ||| Sbjct 47314 ATGTACAAGAAAGCCGAGGCCTCCTTCTGGACGGCTGAGGAGCTCGACCTTGTGCACGAC 47373 Query 42369 ---ACGGCCGGCTGGGAG-TCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACT 42424 | || | | | || |||| | | || ||| | ||| |||| || | || Sbjct 47374 CTCAAGGACTGGAGCAAGCTCACGGACAACGAGCGACAC----TTCATCAAGCACGTGCT 47429 Query 42425 GGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAA 42484 ||||||||||| ||| |||||| || || || |||||| |||||| | |||| || Sbjct 47430 CGCCTTCTTCGCAGCCAGTGACGGTATCGTGAACGAGAACTTGGCCATGAACTTCAGCAA 47489 Query 42485 AGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGT 42544 || |||||| ||||| || |||||||| ||||||||||| ||||| |||||| | Sbjct 47490 CGAAGTGCAGGTGCCCGAGGCTCGTTGCTTCTATGGCTTCCAGATCGCCATTGAGAACAT 47549 Query 42545 GCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCG 42601 ||||| ||||| ||| | |||||||| ||||||||||| ||| | ||||| Sbjct 47550 TCACTCGGAGGTCTACTC---ACTGCTCATTGACACGTACATCAAGGACGCGATCGAGAA 47606 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 || || | ||||| ||||| || || || ||| ||||||||| ||||||| Sbjct 47607 GGACCATCTCCTGCGTGCCATTGAGACCATCCCTTGTGTCACGAAGAAGGCTCACTGGGC 47666 Query 42662 GCTCAACTGGATCGAGAGTCCCG-ACGCAACGTTCGGC---GAGAGGCTGGTAGCCTTTA 42717 ||||| ||| ||| |||| | | | | | | ||| | ||| | || || Sbjct 47667 ACTCAAGTGGTGCGA----CCCGCGTGTATCCTCCTACCCGGAGCGCCTGCTGGCTTTCG 47722 Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG- 42776 | || || || |||||||||||||||||| | ||| ||||||||| ||||| ||| || Sbjct 47723 CTGCTGTGGAAGGCATCTTCTTCTCGGGCTCTTTCTGCTCCATCTTTTGGCTAAAGAAGC 47782 Query 42777 AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTG 42836 || || |||||||| || | |||||||||||| |||||||| | |||||||| || Sbjct 47783 GCGGCCTC-ATGCCCGGTCTGAGCTTCTCGAACGAGCTCATCAGTCGTGACGAGGGCATG 47841 Query 42837 CATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAG 42896 || | |||||| |||||||| ||| ||| | | ||| ||||| | || Sbjct 47842 CACACGGACTTCGCCTGCCTTTTGTACTCCAAGCTGGTCA---CCAAGCTGCCAGAGAGC 47898 Query 42897 CGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCG 42956 || || | | ||||| || || |||| ||| ||| | ||||| | | ||| Sbjct 47899 CGTGTACACGAGATCATTCGTGACGCTGTGGTGATTGAGCACGAGTTTGTGCGTGACTCG 47958 Query 42957 CTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTC 43016 || || ||| ||| | || |||||| | |||||||||| ||||||| ||| ||| Sbjct 47959 CTCCCTGTGGAGCTGATTGGTATGAACTCTGCCCTCATGTGCCAGTACATTGAGTTCGTG 48018 Query 43017 GCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTC 43076 || |||| ||| || | | | | ||| | | ||||| || | | ||| || Sbjct 48019 GCTGACCGTCTGCTCTACTCGCTTGGTGTGTCCAAGATCTACCACGCTAAGAACCCTTTT 48078 Query 43077 GACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCC 43136 |||| ||||| | ||||| | | |||||||||||||||||||||||||| || | | Sbjct 48079 GACTGGATGGACATGATCTCTCTCCAAGGCAAGACCAACTTTTTCGAGAAGCGTGTGGGC 48138 Query 43137 GACTAC 43142 || ||| Sbjct 48139 GAGTAC 48144 >seq4890 Length=10138 Score = 239 bits (264), Expect = 8e-58 Identities = 908/1408 (64%), Gaps = 48/1408 (3%) Strand=Plus/Minus Query 244070 AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGG 244129 ||| ||| | ||| | | |||| || | | ||||| || | || ||| || || | | Sbjct 5362 AGCTCCTTCATCAGATACTTGTTAACGATCGTGAACTCACCAGCCAACACACGACGGTTG 5303 Query 244130 TAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTC 244189 || | |||| || |||||||| ||| |||||||||| ||||| |||||| Sbjct 5302 TACATGTTGGACGTGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAG 5243 Query 244190 GCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGT 244249 || ||||||||||| | |||||||| ||| | | ||||| | || | | Sbjct 5242 GCTGTCGGCATGGGTGCAACCAGCAGCGAGTTACGGAGACCGTGTTTAATGACGTCATCT 5183 Query 244250 CTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCA 244309 | || || ||||| ||| | |||| ||| | || ||| |||||||||||| Sbjct 5182 TTTAGTGCGGCCCAGTTCCAAA-GCCC-AGATGAAG----GTGTGACGCCCCACATGTCG 5129 Query 244310 AACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGC 244369 ||||| | | ||||| ||| | || ||||| | | ||| ||| ||||| | Sbjct 5128 AACTGGAAGATACCCTTACTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCCAATTCC 5069 Query 244370 TGGGCCAGCTTACAGCT-CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTT 244428 ||| | || || | | || | ||| || ||||||| ||||||||||| |||| Sbjct 5068 GTGGCAATCTC-CATCGACGTCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTT 5010 Query 244429 GTTCATGTCGCGGGCCTTGCCGCAGGT-GAAGGGGATGCCCATCATCATGAAGACGTCGG 244487 ||||| || || || |||| | | ||| | | | ||| | ||||| | || | Sbjct 5009 GTTCAATTCACGAGC-TTGCGGGCTCTCGAACGCGTAGTTCATGAGGATGAACGCATCCG 4951 Query 244488 CCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATG---GCTT 244544 |||| ||||| ||||| || || ||||| | || ||| ||||||| | || || | Sbjct 4950 CCAGACCCTGGACGCCAATACCAATGGGACGATGGCGCATGTTGGA---CTTGCGAGCCT 4894 Query 244545 CGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGA 244604 | | || || ||| | ||| ||||||| ||||||||||||||||| ||||||| || Sbjct 4893 CTGCAACAGGATAATAATTGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTGA 4834 Query 244605 CGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCA 244664 | || || ||| || ||||| || | || || ||| | Sbjct 4833 CCACCTCATACAGTCTCTTGTAGTCGAACACA-------CC---------GTTTTCC--A 4792 Query 244665 CAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGT 244724 ||||| || || || |||| |||||| || |||||||| || | |||| Sbjct 4791 CAAACATAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTGT 4732 Query 244725 ACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGG 244784 ||| | | ||| ||| | ||| ||| | ||| || |||| || ||| || || | Sbjct 4731 ACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCCAAGTTCTGCTGGTTCG 4672 Query 244785 ACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGA 244844 ||||| ||| |||||||||||||||||||||||| | || ||||| | ||| ||| Sbjct 4671 ACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGT 4612 Query 244845 CGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCT 244904 | |||| | ||| || | | ||| |||| ||| | || || || || || Sbjct 4611 CTAGGATAGCGAACCACAGCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCTTCT 4552 Query 244905 CGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACG 244964 |||| ||||| || || ||||| ||||||| ||||| || || || | Sbjct 4551 CGTACTTTTCATACAGAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACC-AGGAGCT 4493 Query 244965 ACGCCGGG-CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCG 245023 || ||| || | | |||||||| ||| | ||| || |||| ||||||||| || Sbjct 4492 TCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCA 4433 Query 245024 GGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTC 245083 || | ||| || || | || | ||| | || | ||| || || |||||| Sbjct 4432 GGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCTCATTACCGTGGTTCTTA 4373 Query 245084 CTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCG 245143 | ||| |||| || || || |||||| ||||||| ||||||| ||||| ||||| | | Sbjct 4372 CGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAG 4313 Query 245144 CCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCG 245199 || ||||| || |||||||||| | | ||||| |||| || | || Sbjct 4312 CCCTTGCGCTTACCTCCGCCCTGGTCCA----CATAGCGAGCCGTGTCGTTAAACACACG 4257 Query 245200 CAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCC 245259 || | || | |||||||||||| |||||| ||||| ||||||| | || | Sbjct 4256 CAACATGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGC 4197 Query 245260 CCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCT 245319 | || |||| || || || | ||||| || || ||||| |||||| Sbjct 4196 GCGGATGTTGTGCATACTGATACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTG 4137 Query 245320 CTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGA 245379 ||| | |||||| |||||||| || ||| || ||| | || || || || Sbjct 4136 CTTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAACAAGA 4077 Query 245380 GGACAGCTG-GGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGT 245438 |||| ||| || | ||| | ||| | |||||| ||||| ||| ||||||| || ||| Sbjct 4076 AGACAACTGAGGACGTGGCG-TGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAG- 4019 Query 245439 AGCGGCT-CGAGAGGAACCCGTACGTCT 245465 | | || ||| | || | ||||||||| Sbjct 4018 AACTTCTGCGACATGAGCTCGTACGTCT 3991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944258777712880