Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4890 161 2e-34 seq2571 84.2 3e-11 >seq4890 Length=10138 Score = 161 bits (178), Expect = 2e-34 Identities = 415/621 (67%), Gaps = 21/621 (3%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCA---GGCCTGCTTCTCAGATAGTACAT 203895 ||||||||| |||||||| || |||| |||| || | | | || |||||||| Sbjct 5690 CTTGTCCACAGTGAACTGGATAGCGT---CGGCTTTCGGACGTCCGCGCATGTAGTACAT 5634 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||||||||| || ||||||| ||| |||| | ||||||||| | ||| || || | | Sbjct 5633 GCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGTCAGCTTACTGATAGT 5574 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 |||||||| ||||| ||||||| ||||| || ||| ||| ||| |||| || || | Sbjct 5573 CGGGTCGGCGATGTGGATGTTCAACGACTGACTCTGGCAGATATAAG-CGCCACGGTCAG 5515 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGG 204074 | | || | | || | ||||||| |||||||||||||||||| || || | Sbjct 5514 CCGACAGGTCCAGAACAGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCCTTAA 5455 Query 204075 TGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATC 204133 | | || | || | || | ||| | ||||| || || | ||| || Sbjct 5454 CATCATCCGGAATGTCCT-TGACCTTCTGCACAGAGCCACCATCATTCA-GAATCTGAT- 5398 Query 204134 CTCGT--CTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGA 204191 ||| ||| | ||| ||||| | | ||| |||||| || ||| | ||| | Sbjct 5397 TACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATCAGATACTTGTTAA 5338 Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 |||| || || || | || ||| | ||| || ||| |||| ||| | || |||| Sbjct 5337 CGATCGTGAACTCACCAGCCAACACACGACGGTTGTACATGTTGGACGTGTAAGGCTCGA 5278 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 | |||||||||||| | |||||||| ||| ||| || |||||||| || | |||| Sbjct 5277 TAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATGGGTGCAACCAGCA 5218 Query 204312 GGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCG 204371 | ||||| || | ||||| ||| ||| || || | || ||||| | || | Sbjct 5217 GCGAGTTACGGAGACCGTGTTTAATGACGTCATCTTTTAGTGCGGCCCAGT--TCCAAAG 5160 Query 204372 CACTG-----GGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCT 204426 | | | ||| | |||||||||||||||||||| ||||| || | |||| | || Sbjct 5159 CCCAGATGAAGGTGTGACGCCCCACATGTCGAACTGGAAGATACCCTTACTGGCCGGAGA 5100 Query 204427 GCCCTTGTACGTCGGATAAGG 204447 ||||| | ||||| ||||| Sbjct 5099 GCCCTGGAACGTCTCGTAAGG 5079 >seq2571 Length=74305 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 116091 TTATCGTGTCTGTTTTACCAAAGATCTGCAGACATGGGGTTGGGCGTACCCTTTAACGTT 116150 |||||||||| | | ||||| |||| || |||||||| | || || || || ||| || Sbjct 72022 TTATCGTGTCAGATGTACCAGCGATCGGCCGACATGGGTCTTGGAGTGCCTTTCAACATT 72081 Query 116151 GCGAGCTACGCGCTACTGACTCATATTATGGCACATTTGGCGGACCTGGAAGTCGGAGAA 116210 || ||||||||||| ||||| | | | ||||| || ||| || || || || Sbjct 72082 GCCAGCTACGCGCTGCTGACACGACTGGTTGCACAAGTGACGGGACTAAAACCTGGCGAG 72141 Query 116211 TTGATACACTCTATTGGGGACGCGCACATCTACACCAACCATGTGG 116256 || || ||| ||| || ||||| ||| | ||| |||||||||| Sbjct 72142 TTCATCCACGTTATCGGCGACGCACACGTGTACCTGAACCATGTGG 72187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795087482595280