Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq3105 138 3e-27 seq4260 105 2e-17 seq4261 98.7 2e-15 seq4890 96.9 8e-15 seq2993 95.1 3e-14 seq1938 86.0 1e-11 >seq3105 Length=35891 Score = 138 bits (152), Expect = 3e-27 Identities = 167/227 (74%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || ||||||||||| |||| ||||||||| | || ||| Sbjct 16572 CGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTG 16631 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| ||||||||||| |||||||||||||| || ||||| Sbjct 16632 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCC 16691 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || |||||||| || ||||| || || | | |||| | | || || || | | Sbjct 16692 TCCTTGTCCTGAATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGC 16751 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||||| ||||| ||||| || || || || ||||| || |||||| Sbjct 16752 GTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTG---CATTTT 16795 >seq4260 Length=9660 Score = 105 bits (116), Expect = 2e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || |||||||| || |||||||| |||| ||||||||| || || Sbjct 9515 CGCAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTG 9574 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| || |||||||| | |||||||||||| || || ||| Sbjct 9575 CGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCT 9634 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCAC 199554 || ||||| ||||||||||| || Sbjct 9635 TCCTTGTCCTGGATCTTTTGCTTGAC 9660 >seq4261 Length=68810 Score = 98.7 bits (108), Expect = 2e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGC 199534 || ||||||||||| || |||||||| | |||||||||||| || || ||||| Sbjct 1 TCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTG 60 Query 199535 TCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATC 199594 ||||| ||||||||||| ||| |||| | ||| | | || || |||| ||||||| Sbjct 61 TCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATC 120 Query 199595 GTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || | || ||||| ||||| || Sbjct 121 GTCTTGCCGGTCAAGGTCTTCACGAAAATCTG 152 >seq4890 Length=10138 Score = 96.9 bits (106), Expect = 8e-15 Identities = 170/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 167768 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 167827 ||||||||||||| |||||||||| || ||| ||||| | | || | | Sbjct 4657 GCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAAC 4598 Query 167828 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 167887 || || | || || || | || | | ||| | |||||| || ||||| | ||||| Sbjct 4597 CACAGCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCTTCTCGTACTTTTCATAC 4538 Query 167888 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAG 167947 || |||| || || | || | |||| ||||| |||||||| || ||||| || Sbjct 4537 AGAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAGGAGCTTCGTTGGGACAGAAC 4478 Query 167948 AGACTCCAATTTCCATCGGTCTCGACCCTCTTCATGAAGAGGTCGGAAGTCCAAATCGCG 168007 | |||||| || |||| || ||| || |||||||||||||| || | ||| | |||| Sbjct 4477 AAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCG 4418 Query 168008 TAGAACAA 168015 || ||||| Sbjct 4417 TAAAACAA 4410 >seq2993 Length=38503 Score = 95.1 bits (104), Expect = 3e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| | | || | || || || |||||||| |||||||||| Sbjct 7299 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 7358 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | || ||||||||||| || ||||| || ||||| || || ||||| || | Sbjct 7359 TCAGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 7418 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 | | | |||| | | || || || | |||||| ||||| ||||| | || ||||||| Sbjct 7419 CAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAA 7478 Query 199620 AAATTTG 199626 | || || Sbjct 7479 AGATCTG 7485 >seq1938 Length=18534 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 || || || |||||||| || |||||||| |||||||||||||| || ||| ||||| Sbjct 16 CCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCC 75 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||||||||| ||||||||| |||| | ||| | | || || || | || Sbjct 76 TTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGGGTA 135 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || | || ||||| || || || Sbjct 136 ATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTG 170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178818690091471