Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq5241 444 7e-120 seq1828 223 4e-53 seq6093 122 1e-22 seq4890 98.7 1e-15 >seq5241 Length=17291 Score = 444 bits (492), Expect = 7e-120 Identities = 1057/1585 (67%), Gaps = 23/1585 (1%) Strand=Plus/Minus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||||| || || ||||| || || || |||||| || || || | ||| Sbjct 12401 TTCATCTTGGTCCTTGTACTTCTCGGCGTCGGCGACCATGCGGTCGATCTCGGACTGCGA 12342 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 | || || ||||| ||||| ||||| ||||| | || |||| | ||| || | Sbjct 12341 CAGTCGACCTTTATCGTTCGTGATCGTGATCTTGTTCTCCTTGCCCGTCGACTTCTCCAC 12282 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 || || |||||||| || || ||||||| |||||| | || | ||| || || Sbjct 12281 GGCCGAGACGTTCAAAATGCCGTTGACATCAACGTCGAACGTCACGTCAATCTGAGGCAC 12222 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 ||| | ||| || || ||||| | | || | || || | | |||||| Sbjct 12221 ACCGCGCGGCATGGGCGGGATACCGTCCAGGTTGAACTTGCCCAGAAGATGGTTATCACG 12162 Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGC 6867 || | | | ||||| || || | |||| || ||| | || || || || Sbjct 12161 CGTCATGGTTCGTTCGCCCTCGAACACTTGGATCAGCACGCCCGGCTGGTTGTCCGCGTA 12102 Query 6868 CGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGT 6927 ||| ||||| | || ||||| | || | ||| || || | ||||| | | ||| Sbjct 12101 CGTCGAGAACGTCTGCGTCTTCTTCGCAGGCACCGTAGTGTTGCGTGGAATGAGCTTGGT 12042 Query 6928 CATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAG 6987 ||||| ||||| || || | || | ||||| |||| ||||||| |||| ||| Sbjct 12041 CATAACTCCACCGGCCGTCTCCAAACCCAACGACAGCGGTGCGACGTCCAGCAGTAGCAG 11982 Query 6988 GTCTTGAACAGATT---CGTTCCCT--TCACCCGTTAAGATGGCGGCTTGGACCGTCGCC 7042 |||||| ||| || || | || | || | | || || || || ||||| || Sbjct 11981 GTCTTG--CAGCTTGGACGATGACTCATTGCCACTCAGTATCGCCGCCTGCACCGTGGCG 11924 Query 7043 CCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAA 7102 ||||| ||||| || || || ||||| |||| || ||| || || ||||| || || Sbjct 11923 CCGTACGCGACGGCTTCGTCCGGGTTGATCGACTTGAACAGATCCTTGCCGTTGAAGAAA 11864 Query 7103 TCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCA 7162 || | || ||| || | |||||||| || || ||||| ||||||| ||||| || Sbjct 11863 CCCATCAGCAATTGCTGCACCTTCGGGATGCGCGTAGATCCGCCGACCAGGACGATCTCG 11804 Query 7163 TTCACTTTCGATTTATCGAT--CTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATAC 7220 | ||| | | || | || ||||||||| || | | |||| || ||||| Sbjct 11803 TCCACCT--GGTTCTTGGACAGCTTTGAGTCACGCAAAACCTGCGCGACCGGCTCCATCG 11746 Query 7221 ATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGA 7280 || ||||| |||| ||||| ||||| |||||||| || || |||| | | || Sbjct 11745 TCTTGCGGAAGTAGTCGGCGCACAGGTCCTCGAAACGTGCGCGCGTGATGGTCGAGTTGA 11686 Query 7281 AATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACG 7340 |||| | || || || ||| ||||| |||| | | || |||| | ||| |||| Sbjct 11685 AATCGATACCATCCAGTAGCGAGTCAATCTCAAGGTACGCCTGCGCCGAAGTAGACAACG 11626 Query 7341 TTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAA 7400 | ||||| ||||| || |||||||| || | ||||| || |||||| |||| | | | Sbjct 11625 TCCGCTTGGCGCGTTCGCACGCCGTACGCAGGCGACGCAGCGCACGCTGGTTCACTGTCA 11566 Query 7401 TATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGA 7460 |||| || | || || || || || | ||| | | | || | |||| Sbjct 11565 TATCCTTGCGGTACTTGCGCTTGAATTCCTGTACGAAATATTCGACCAGACGGTTGTCGA 11506 Query 7461 AATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTT 7520 | || ||||| |||||||| || || ||||| ||||| ||||| || ||||| ||| ||| Sbjct 11505 AGTCCTCACCTCCCAAGTGCGTGTCACCCGCTGTCGCCTTGACCTCGAAGATGCCTTCTT 11446 Query 7521 CAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCG 7580 |||| | | || || ||||| ||||| || || || || || || || || ||||| Sbjct 11445 CAATAGTGAGCAGAGAGACATCGAACGTTCCGCCGCCGAGATCGAAGATCAGCACGTTGT 11386 Query 7581 TATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAA 7640 || | |||| ||| || || || || ||||| || || ||||| || || || | Sbjct 11385 GCTCACCTCCTTT---CTTGTCCAGCCCATAGGCGATCGCAGCGGCCGTCGGCTCGTTGA 11329 Query 7641 TAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGC 7699 | ||||| || ||| |||| |||||||||| | |||||||||| |||||||| || ||| Sbjct 11328 TGATACGCAGCACA-TTCAAACCAGCAATAGCTCCCGCATCTTTAGTCGCTTGGCGCTGC 11270 Query 7700 GAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATAC 7759 || ||||| ||||||||||||||||| || ||||||| | | || | || || | | Sbjct 11269 GAGTCGTTGAAGTAGGCCGGGACCGTCACCACCGCGTTCTTCACATGTTTGCCAATGAAT 11210 Query 7760 GATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAAC 7819 | || || | | | ||| ||| | | ||||| || |||||||| || | ||| Sbjct 11209 GCCTCGGCCACCTTTCGCATCTTGATCAACACCATAGACGAAATCTCCTCCGGTTGGAAC 11150 Query 7820 TGTTTCGTTTCACCGTTAAAAT-CAACTTCAATCATG-GGTTTATCCGCAGCACCGGGGA 7877 |||| || || || || | || | || | || ||||| | | ||||||| | | Sbjct 11149 GTCTTCGACTCGCCCTTGAACTGCACCACCAGT--TGAGGTTTGTTCTCAGCACCACGAA 11092 Query 7878 TAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTC 7937 ||||| ||| ||| | || || || || || | | | || | ||||| | | Sbjct 11091 CTACCTTGAACGGCCAGTGCTTGATGTCCGACTGCACTTCTGGATCGGTGAACTTGCGCC 11032 Query 7938 CGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCG 7997 |||| | ||||| ||||||| || ||||| | | |||||| || |||||||| | Sbjct 11031 CGATCAACCGCTTGACATCAAACACCGTGTTGTGTGCGTTCATAGCCACCTGGTTCTTGG 10972 Query 7998 CCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTC 8057 | || || ||||| || || || || || ||||| |||||||| |||||||| | Sbjct 10971 CAGCATCGCCGATGAGGCGCTC---CGAGTCTGTGAACGCCACGTACGACGGGGTCGTGC 10915 Query 8058 GATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACG 8117 | || || |||||||| || || || || ||||||||||| ||||| ||||||||||||| Sbjct 10914 GGTTGCCCTGGTCGTTGGCGATGATCTCCACGCGGTCGTTCTGCCACACGCCGACGCACG 10855 Query 8118 AATACGTTGTTCCTAAATCAATACC 8142 | || || || || | |||||| || Sbjct 10854 AGTAGGTCGTGCCCAGATCAATGCC 10830 >seq1828 Length=4768 Score = 223 bits (246), Expect = 4e-53 Identities = 358/514 (70%), Gaps = 3/514 (1%) Strand=Plus/Minus Query 7631 GGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690 || || ||||||||||| || ||| || || || || | | || || || || || Sbjct 4766 GGCTCGTTAATAATACGCAGCACGTTGAGACCGGCGATGGCACCGGCGTCCTTGGTGGCC 4707 Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750 || || || || ||||| ||||||||||| ||||| | ||| |||| | |||| | ||| Sbjct 4706 TGGCGCTGTGAGTCGTTGAAGTAGGCCGGCACCGTGATGACGGCGTTCTTGACCTCCTTG 4647 Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCA 7810 |||| | | || || | || ||| ||| | || ||||| || || |||||||| Sbjct 4646 CCGATGAAGGCCTCGGCCACCTCGCGCATCTTGATCAGCACCATAGACGAGATCTCTTCG 4587 Query 7811 GCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCA 7870 | | ||| || | ||||| || || | || ||| || || || | | | Sbjct 4586 GGCTGGAACGTCTTGCTCTCACCCTTGAACTGCACCGTGATCTGCGGCTTGTCACCGGGA 4527 Query 7871 CCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAAC 7930 |||| | | ||| ||| ||| | || || ||| | || || | ||||||| ||| Sbjct 4526 CCGGACGTGATCTTGAACGGCCAGTGCTTGATGTCGGCCTGCACGATTGGGTCCGAGAAC 4467 Query 7931 TTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGG 7990 || | ||||| |||||||| || || || || ||||| | | ||||||||| ||| Sbjct 4466 TTGCGGCCGATCAGACGCTTGGCGTCGAACACCGTGTTGTGCGCGTTCATGGCAACCTGG 4407 Query 7991 TTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG 8050 ||||| || || || ||||| ||||| || | | |||| || ||||||||||| ||| Sbjct 4406 TTCTTGGCGGCATCACCGATCAGACGCTCGGTGT---CCGTGAAGGCGACGTACGACGGG 4350 Query 8051 GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCG 8110 || || || || || |||||||| || || || || ||||||||||| ||||| |||||| Sbjct 4349 GTGGTACGGTTACCCTGGTCGTTGGCGATGATCTCCACGCGGTCGTTCTGCCACACGCCG 4290 Query 8111 ACGCACGAATACGTTGTTCCTAAATCAATACCGA 8144 |||||||| || || || || | ||||| |||| Sbjct 4289 ACGCACGAGTAGGTCGTGCCAAGGTCAATGCCGA 4256 >seq6093 Length=37263 Score = 122 bits (134), Expect = 1e-22 Identities = 234/343 (68%), Gaps = 8/343 (2%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||| || ||||| || | | || || || ||||| ||||| || || | ||| Sbjct 18317 ATCGAAGTCCTCACCGCCAAGCAGCGTGTCACCGTTGGTCGACTTGACCTCGAACACACC 18376 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 || || | | | ||| ||||| || ||||| ||||||||||| || | | Sbjct 18377 GCCCGAGATCTCCAGGATCGACACATCGAAGGTACCGCCACCCAGGTCGAACACAGCAAT 18436 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 | | || ||||| | |||| | || ||||| || | ||| || ||||| || || Sbjct 18437 GACCTTACCGTCGGCCTTGTCCATA------CCGTAGGCCAGAGCAGCAGCCGTAGGCTC 18490 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || |||||||| || || ||| || ||||| | | || || || || || || || Sbjct 18491 GTTGATAATACGGAGCACGTCCAGACCGGCAATCTTACCGGCGTCCTTGGTAGCCTGACG 18550 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA- 7754 ||||| ||||| ||||||||||||||||| ||||| || | || || ||| |||| Sbjct 18551 CTGCGAGTCGTTGAAGTAGGCCGGGACCGTCACGACGGCCTGGGTCACAGGCTTGCCGAG 18610 Query 7755 GATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGA 7797 || || | || ||| | || ||||| || || || ||||| || Sbjct 18611 GAAACCA-TCGGCGGTCTCCTTCATCTTAGTCAGCACCATGGA 18652 >seq4890 Length=10138 Score = 98.7 bits (108), Expect = 1e-15 Identities = 348/538 (65%), Gaps = 7/538 (1%) Strand=Plus/Minus Query 105463 TCGTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTA-CACGTCTGAAAGACCCTTTGC 105521 ||||| || || || ||| |||||||||| | || | ||| || | ||||| || Sbjct 4552 TCGTACTTTTCATACAGAGCTTCAAACTCATCGCCCCAGCAC-TCGTACAGACCAGGAGC 4494 Query 105522 CTGATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATC 105581 | | ||||| ||||| ||| || |||| || || || | |||||||| | ||| Sbjct 4493 TTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATC 4434 Query 105582 TGGAATCCACATGGCTGAAAAGAGGTCTCGA-CACCTCGCCTCTTCATCACCTTGATTCA 105640 || | ||||| || |||| | ||| || | | || || ||| ||| || ||| Sbjct 4433 AGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCT-CATTACCGTGGTTCT 4375 Query 105641 AACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAG 105700 ||| | || || || |||| | ||||||||||| || || || |||| || | | Sbjct 4374 TACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACG 4315 Query 105701 ACCCTTTACG---ACGCCCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTA 105757 | || || || || || | || | ||||| | || || |||| |||| || | Sbjct 4314 AGCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCA 4255 Query 105758 ACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCAC 105817 |||| || ||||| || | || | || || || || || || | ||| | || | Sbjct 4254 ACATGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGC 4195 Query 105818 GTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTT 105877 | | | ||| | | || ||||| || ||||| ||| ||||| || || | | Sbjct 4194 GGATGTTGTGCATACTGATACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGCT 4135 Query 105878 TTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATG 105937 ||| || |||||||| || || ||| || |||| | || | |||||||| || | Sbjct 4134 TTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAACAAGAAG 4075 Query 105938 ACATTTGTGGTCTGGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAACAA 105995 ||| || || | || || || || ||||| ||||| || || || || |||| || Sbjct 4074 ACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAA 4017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635078710502920