Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq4890 257 2e-63 seq4811 111 2e-19 seq1734 100 4e-16 seq2980 98.7 1e-15 seq6376 96.9 4e-15 >seq4890 Length=10138 Score = 257 bits (284), Expect = 2e-63 Identities = 1080/1676 (64%), Gaps = 42/1676 (3%) Strand=Plus/Plus Query 111673 TGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 ||||||| ||||| ||||| | | || | |||| ||||| || || || |||||| Sbjct 3988 TGGAGACGTACGAGCTCATGTCGCAGAAGT-TCTTCACGCACGCCACCCCTACTCTCTTC 4046 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||| || || ||| | || || |||| ||||||||| | || | |||| || Sbjct 4047 AACGCCGGCACGCCACGTCCTCAGTTGTCTTCTTGTTTCCTATTGGCTATGCAGGATGAC 4106 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || || | |||||||||| ||| || | |||| ||| ||||| || ||||| || Sbjct 4107 TCTATTGAGGGCATTTACGACACCCTAAAGCAATGCGCCTGTATCTCTAAATGGGCGGGC 4166 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911 |||||||| || || || | || | |||| || || | || || || Sbjct 4167 GGTATCGGTATCAGTATGCACAACATCCGCGCCACTAACAGCTACATCCGCGGCACGAAC 4226 Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971 || || | || ||||| || ||| | || || ||||||| ||| || |||||||| Sbjct 4227 GGCTCCTCTAACGGCATTATCCCCATGTTGCGTGTGTTTAACGACACGGCTCGCTATGTG 4286 Query 111972 AACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCG 112028 |||| | || || |||||||| || |||| |||| | ||||| |||||||| Sbjct 4287 GACCAGGGCGGAGGTAAGCGCAAGGGCTCGTTCGCTATCTACTTGGAGCCGTGGCACGCC 4346 Query 112029 GATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGC 112088 || | | |||||||| || ||||| ||||| ||| ||||| | || |||| Sbjct 4347 GACGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACGGTAATGAGCTGCACCGCGCCCGC 4406 Query 112089 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 112148 || | || | ||| || ||| | || |||||||||||||||||||| |||| | |||| Sbjct 4407 GACTTGTTTTACGCGCTGTGGGTGCCTGATCTCTTCATGAAGAGAGTGGAGGCCAATGGC 4466 Query 112149 AATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGTGAGGA 112207 || ||| | | || ||||| || | || || ||||| | ||| ||| | ||| || || Sbjct 4467 AAGTGGAGTTTGTTCTGTCCCAACGAAGCTCCTGGTCTGTACGAGTGCTG-GGGCGATGA 4525 Query 112208 GTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCAGC 112267 ||||||||| || || |||||||||| | ||| | || ||| | ||| | || Sbjct 4526 GTTTGAAGCTCTGTATGAAAAGTACGAGAAGGAAGGACGTGCGCGTAAGACAATCAACGC 4585 Query 112268 TGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCT 112327 | | ||||| ||||| || | |||| | ||||| || || | ||||| Sbjct 4586 TCAGCAGCTGTGGTTCGCTATCCTAGACGCTCAGATTGAGACGGGAGTGCCCTTCATGCT 4645 Query 112328 TTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTC 112387 ||||| ||||| ||||| ||| || || |||| |||||| |||| |||| Sbjct 4646 CTACAAGGACGCAGCTAACCGCAAGTCGAACCAGCAGAACTTGGGTACGATC---CGTTC 4702 Query 112388 ---CAACCTCTGTACAGAAATCTTGGAATTTACAGACA-AAGATGAGACGGCTGTGTGTA 112443 |||| | || ||| || |||| | || | || |||||| ||| ||||| | Sbjct 4703 CAGCAACTTATGCTGCGAAGTCATGGAGTACAC-GTCACCCGATGAGGTGGCAGTGTGCA 4761 Query 112444 ACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATG 112503 || | || || | || || || | || |||||| | || | || || || Sbjct 4762 ACTTGGCGTCTGTGGCGCTGCCTATGTTTGTGGA-----AAACGGTG-TGTTCGACTACA 4815 Query 112504 AAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAA 112563 | | ||| | || || || |||| ||||| |||| || || || | Sbjct 4816 AGAGACTGTATGAGGTGGTCAAGGTGATCACGCGCAACCTCAACAAGGTCATCGACGTCA 4875 Query 112564 ATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTC 112622 ||| ||| || |||| ||| ||||| || || || ||| | || ||||| |||||| | Sbjct 4876 ATTATTATCCTGTTGCAGA-GGCTCGCAAGTCCAACATGCGCCATCGTCCCATTGGTATT 4934 Query 112623 GGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAA 112682 || ||||| ||||| ||||||| ||||| || | |||| || || | || Sbjct 4935 GGCGTCCAGGGTCTGGCGGATGCGTTCATCCTCATGAACTACGCGTTCGAGAGCCCGCAA 4994 Query 112683 GCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGT 112742 || ||| | || | || || ||||| || || || || | ||| || Sbjct 4995 GCTCGTGAATTGAACAAGAACATCTTCGAGACGATCTACTTTGCTGCCATGGAGACGTCG 5054 Query 112743 TCGGAG-TTGGCA-GAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA- 112799 |||| ||| || | ||| ||||| || || || || |||| ||||| || || Sbjct 5055 ATGGAGATTGCCACGGAATTG--GGTCCTTACGAGACGTTCCAGGGCTCTCCGGC--CAG 5110 Query 112800 CAAGGGGTGCTT-CAATTTGATATGTGGGAAGGTGAGACC--AAGCTTCACTACG--ACT 112854 ||||| ||| || || || ||||||| || | ||| | || || | ||| Sbjct 5111 TAAGGGTATCTTCCAGTTCGACATGTGGG-GCGTCACACCTTCATCTGGGCTTTGGAACT 5169 Query 112855 GGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCAC 112914 ||| ||| || || || | ||| | | ||||| |||||| || || | |||| Sbjct 5170 GGGCCGCACTAAAAGATGACGTCATTAAACACGGTCTCCGTAACTCGCTGCTGGTTGCAC 5229 Query 112915 CAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACA 112974 | ||||| ||||||||||| || || ||| |||| || || || | | || || |||| Sbjct 5230 CCATGCCGACAGCCTCCACGGCTCAGATCCTGGGCAACAACGAGTCTATCGAGCCTTACA 5289 Query 112975 CGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATC 113034 || | ||||| || | | | || || ||||| ||| || |||||| ||| Sbjct 5290 CGTCCAACATGTACAACCGTCGTGTGTTGGCTGGTGAGTTCACGATCGTTAACAAGTATC 5349 Query 113035 TCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGA--TATGAAGGATCTCATGGT 113092 | || | || || | ||| | || | ||| | ||| || | | ||| || | Sbjct 5350 TGATGAAGGAGCTTATCGAGCTCGGCATTTGGACGCCGGAAGTACGTA--ATCAGATTCT 5407 Query 113093 GAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGTA 113152 ||| | ||||| || | || || | ||| ||||| ||||| ||||| || ||| Sbjct 5408 GAATGATGGTGGCTCTGTGCAGAAGGTCAAGGACATTCCGGATGATGTTAAGGAGAAGTA 5467 Query 113153 CCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCG 113212 | || || ||||| |||||| ||||| ||| | ||| || | || || ||||| || Sbjct 5468 CAAGACGGTGTGGGAGATCAAGCAGAAGGCTGTTCTGGACCTGTCGGCTGACCGTGG-CG 5526 Query 113213 CTT-CATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGC 113271 ||| || || ||||| |||| | ||| | || || || |||| Sbjct 5527 CTTATATCTGCCAGAGTCAGTCGTTGAACATCCACATCGCCGACCCGACTATCAGTAAGC 5586 Query 113272 TCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTAC 113327 | | || |||||| | ||| |||||||||||| ||||| || || ||||| ||| Sbjct 5587 TGACGTCCATGCACTTTTACGCTTGGAAGAAGGGACTCAAGACCGGCATGTACTAC 5642 >seq4811 Length=93528 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 ||||| || | || || || ||| || || ||||||||||| || || |||||| | Sbjct 47704 GAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGGCATCTTCTTCTCGGGCTCTTTCTGCTCC 47763 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 || | |||||| |||||||| || |||||||| ||||| ||||||| |||||||| ||| Sbjct 47764 ATCTTTTGGCTAAAGAAGCGCGGCCTCATGCCCGGTCTGAGCTTCTCGAACGAGCTCATC 47823 Query 102300 TCTCGTGACGAGGG 102313 |||||||||||| Sbjct 47824 AGTCGTGACGAGGG 47837 >seq1734 Length=28608 Score = 100 bits (110), Expect = 4e-16 Identities = 137/188 (73%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAG--CGACTTCAAAGA 16122 || ||||||||||| ||||||| |||||| ||| | || ||| | ||||| | |||| Sbjct 22562 GCGTCAATCTCATCGATGAAGATGATGCACGGT-GCCTTCCGCTTGGCCGACT-CGAAGA 22619 Query 16123 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 16182 | || || || || |||||||||||| || ||||||| | || | || | ||| Sbjct 22620 GGTCACGCACGCGACGGGCGCCCACACCTACGTACATCTCTTCGAACTCTGATCCAGAAG 22679 Query 16183 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 16242 | | || ||| ||||| || ||||| || || || || ||||| || |||||||||| Sbjct 22680 AATAGAAGAACGGGACGCCAGCCTCACCAGCGATAGCACGAGCGAGTAGCGTCTTACCCG 22739 Query 16243 TACCTGGC 16250 |||| ||| Sbjct 22740 TACCAGGC 22747 >seq2980 Length=80372 Score = 98.7 bits (108), Expect = 1e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 176876 AGCTGTGTGACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCG 176935 ||||||| ||| | ||||||||| ||||| | || ||||| ||||||||||||||| Sbjct 15545 AGCTGTGCGACCGTGGCATCACGTACATTTAGAAGTTTACCACGCAGAGGGAAGACACCG 15604 Query 176936 TAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCC 176995 || || ||||| ||||| || | || || || || || || | ||||| ||||||||| Sbjct 15605 TACTGGTCGCGTCCAACGACGGCCAGCCCAGCCACTGCAAGAGCCTTCGCTGAATCACCC 15664 Query 176996 TCTGTCA 177002 || |||| Sbjct 15665 TCCGTCA 15671 >seq6376 Length=24334 Score = 96.9 bits (106), Expect = 4e-15 Identities = 251/376 (67%), Gaps = 10/376 (3%) Strand=Plus/Plus Query 176702 GGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCG 176761 |||||||||| |||||| | |||| | |||||||||||||| ||| |||| ||| Sbjct 14260 GGCCAGAAGTGGTGAATGAGGTTGATCACCAGACCCTTGATGTGACTACCATCGTGATCC 14319 Query 176762 GCATCCGTCATGATCATGAGACGACCATACCG-AAGCTCG-GAAACATCTTGATAGTCCT 176819 ||| | ||||||||| | | ||||| || |||| | | | | || | || | || Sbjct 14320 TGATCTGCCATGATCATCAAGTGGCCATAACGCAAGCCCTTGGTAGA-CTCG-TACTTCT 14377 Query 176820 TACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCT 176879 || | | ||||| | ||||| | || | || ||| | ||| || || Sbjct 14378 GGCCGTACTTGAGACCAAGAATCTTGACCACATTCTGGATCTCGTCGTTCTTCAGGATCT 14437 Query 176880 GTGTGACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGT 176939 ||| | ||| |||||||| || ||| || | | ||||||||||| |||| Sbjct 14438 GTGAGTGGCTGGCTTCACGAACGTTGAGCATCTTACCTCTCAACGGGAAGACACCATAGT 14497 Query 176940 GATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTG 176999 ||| | ||||| |||| |||||| | || || | ||| || || ||||| ||||| | Sbjct 14498 AATCTCTGCCAACAACAGCGAGACCGCCCACGGCAACCGTCTTGGCGGAATCTCCCTCCG 14557 Query 177000 TCACGATGAGTGTACA---CTTGCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCA 177056 | | ||| || || || ||||| | || ||||| || | ||| ||||| |||| Sbjct 14558 TAAGGATCAGAGTGCAGTCCTTGC---TCTTCGCGGTACCAGCGTGGTTGGCATCGTCCA 14614 Query 177057 ATTTGGGAATACCAGT 177072 |||||| |||||||| Sbjct 14615 GTTTGGGGATACCAGT 14630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620689536025360