Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq4890 244 1e-59 seq2543 147 3e-30 seq1734 123 3e-23 seq4811 102 1e-16 seq6376 87.8 2e-12 >seq4890 Length=10138 Score = 244 bits (270), Expect = 1e-59 Identities = 1084/1691 (64%), Gaps = 54/1691 (3%) Strand=Plus/Minus Query 109414 TAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTG 109473 || ||||| || || ||||| || |||||| ||||| | ||||| || | || || Sbjct 5641 TAGTACATGCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGTCAGCTTA 5582 Query 109474 GAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATG-AATCGACC 109532 | ||||| | || | ||||| ||||||| ||| ||| || || || Sbjct 5581 CTGATAGTCGGGTCGGCGATGTGGATGTTCAACGACTGACTCTGGCAGATATAAGCG-CC 5523 Query 109533 ACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAA 109592 ||| ||||||| || ||| | | | ||| || | || ||||| || ||||||||| Sbjct 5522 ACGGTCAGCCGACAGGTCCAGAACAGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTT 5463 Query 109593 ATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTCACCAT 109652 | ||| | |||||| ||||||||| || || || | |||||||||| | |||| || Sbjct 5462 CTCCTTAACATCATCCGGAATGTCCTTGACCTTCTGCACAGAGCCACCATCATTCAGAAT 5403 Query 109653 GAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTT 109712 ||| | || || ||| | |||| || | || || | | |||| ||| Sbjct 5402 CTGATTACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATCAGATACTT 5343 Query 109713 GTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGG 109772 ||| || | || |||||||| | || ||| ||| ||||| | |||||| || Sbjct 5342 GTTAACGATCGTGAACTCACCAGCCAACACACGACGGTTGTACATGTTGGACGTGTAAGG 5283 Query 109773 TTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCAT 109832 |||| | |||| |||||||| ||||| || || ||||| ||||| |||||||| || | Sbjct 5282 CTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATGGGTGCAAC 5223 Query 109833 GAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATA 109892 || || ||| |||||||| | | | || || | |||| |||| | | Sbjct 5222 CAGCAGCGAGTTACGGAGACCGTGTTTAATGACGTCATCTTTTAGTGCGGCCCAGTTCCA 5163 Query 109893 ACGACCACTAAATTTAG-TCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAG 109951 | | ||| || || | | || ||||||| || || | | ||||| | | Sbjct 5162 AAGCCCAG---ATGAAGGTGTGACGC-CCCACATGTCGAACTGGAAGATACCCTTACTGG 5107 Query 109952 CAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCT 110011 | ||||| |||| ||| ||||||| | ||| || ||| | ||| || | || Sbjct 5106 CCGGAGAGCCCTGGAACGTCTCGTAAGGACCCAATTCCGTGGCAATCTCCATCGACGTCT 5047 Query 110012 CTAGTGCCGCATGATACATAGTCTCAAAAATAT----GAGCA-TTCATGAG---GCGAGA 110063 | | || ||| || || ||||| || || | | || |||| ||| ||| | Sbjct 5046 CCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCTTGCGGG- 4988 Query 110064 CTCTTCACAGTCGAAGG-GAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAACAC 110122 |||| |||| | | || || | || | ||| ||||||| |||||||| || | Sbjct 4987 CTCT-------CGAACGCGTAGTTCATGAGGA-TGAACGCATCCGCCAGACCCTGGACGC 4936 Query 110123 CGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGT 110182 | | ||||||||| ||||| |||||| || ||||| | | || || ||| | | Sbjct 4935 CAATACCAATGGGACGATGGCGCATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAAT 4876 Query 110183 TGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGT 110242 || |||||||||| ||||| || ||| | ||| | |||| ||| | | Sbjct 4875 TGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTGACCACCTCATACAGTCTCT 4816 Query 110243 CGTAATCGAACGTTTTCGTCTCCTTATTG-ACATATTTGGGGAGAGCAATAGACGCAAGA 110301 ||| |||||| | || | || ||| | | || || || | |||||| | Sbjct 4815 TGTAGTCGAACA-------CACCGTTTTCCACAAACATAGGCAGCGCCACAGACGCCAAG 4763 Query 110302 TTGCACACAGAAGTCTCGTCTT-TGTCGGTGTATTCCAAAATTTCCGTACACAAGTTG-- 110358 |||||||| | ||| || || || |||| |||| | ||| || |||||| Sbjct 4762 TTGCACACTGCCACCTCATCGGGTGACG-TGTACTCCATGACTTCGCAGCATAAGTTGCT 4704 Query 110359 -GAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATA 110417 |||| | | ||||||||||| ||| ||||| ||| ||| ||| ||||| || Sbjct 4703 GGAACGGATCGT---ACCCAAGTTCTGCTGGTTCGACTTGCGGTTAGCTGCGTCCTTGTA 4647 Query 110418 GAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGC 110477 ||||||| | || || || || |||| | | || || || ||| || | || Sbjct 4646 GAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACCA--CAGCTGC 4589 Query 110478 GGCGGGGACAGTTGCGTTA---GCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTC 110534 | | | | ||| ||| || | ||||||| ||||||||| |||| | || Sbjct 4588 TGAGCGTTGA-TTGTCTTACGCGCACGTCCTTCCTTCTCGTACTTTTCATACAGAGCTTC 4530 Query 110535 AAATTCCTGTCCGTA-CACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACC 110593 ||| || | || | ||| || | ||||| || | || ||||||||| | || Sbjct 4529 AAACTCATCGCCCCAGCAC-TCGTACAGACCAGGAGCTTCGTTGGGACAGAACAAACTCC 4471 Query 110594 AATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAA 110653 | || ||| |||| || ||||||||||| || ||||| | ||||| ||| | || | Sbjct 4470 ACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCGTAAAACA 4411 Query 110654 GGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGA 110713 ||| ||| || | |||| ||| ||||| || || |||| || || | | Sbjct 4410 AGTCGCGGGCGCGGTGCAGCTCATTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACA 4351 Query 110714 TATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCT 110770 || | |||||| || || | |||| ||||| || ||||| || || || ||| Sbjct 4350 CGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCTCCGCCCT 4291 Query 110771 GGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATT 110830 ||| |||||||| || ||| | || || || | | ||| || ||||| || | || Sbjct 4290 GGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGGGATAATGCCGTTAGAGG 4231 Query 110831 GACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAA 110890 || || || || | || | ||| |||| || |||| ||| ||| ||||| | Sbjct 4230 AGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTGATACCGA 4171 Query 110891 TACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAA 110950 |||| |||||||| ||| || || || | | || || | ||||| || |||| Sbjct 4170 TACCGCCCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTGTCGTAAATGCCCTCAA 4111 Query 110951 TCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCG 111010 | || || ||| | || | ||| || |||||||||| ||||||||| ||||| || | Sbjct 4110 TAGAGTCATCCTGCATAGCCAATAGGAAACAAGAAGACAACTGAGGACGTGGCGTGCCGG 4051 Query 111011 CATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCT-TGGGACATCTTGTTGTATGTG 111069 | |||||||| ||||| || || || |||| | || | || ||||| | ||| || Sbjct 4050 CGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGA-ACTTCTGCGACATGAGCTCGTACGTC 3992 Query 111070 TCGAGTGCGGA 111080 || |||||||| Sbjct 3991 TCCAGTGCGGA 3981 >seq2543 Length=21758 Score = 147 bits (162), Expect = 3e-30 Identities = 291/424 (69%), Gaps = 25/424 (6%) Strand=Plus/Minus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| || ||||| ||||| || || || | ||| | || |||||||| | ||||| Sbjct 4052 ATCTGCCGGTCGAATCGACCGGGACGAAGGATAGCCTTGTCTAGAATATCAGCTCGGTTC 3993 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAGA 11613 ||| | || | || |||| || |||| | || ||| || ||||| || || Sbjct 3992 GTACCAGCGAGCACCACAACACC---CTCACTCGAGTTGAAGCCATCCATCTCGACCAGC 3936 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTG------GAGGGCATACCACCTGC--CG 11665 |||||||| | || | ||||||||||||||| ||| | || ||| || Sbjct 3935 AGCTGGTTCAGAGTATTCTCACGCTCATCGTTGCCACCCGAGAAGTTTCCTT-TGCTTCG 3877 Query 11666 A--ACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGC 11723 | |||| | ||||| ||||||||||||||||| ||||| ||||| ||||| Sbjct 3876 AGCACGCGCC------ACAGCATCAATCTCATCGATGAACACGATGCACGGAGCATTGGC 3823 Query 11724 ACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAAC 11783 ||| |||| | ||| || ||||| ||||| || || ||||| |||||||| |||| Sbjct 3822 ACGAGCCTCCTTGAACAGGTCACGCACACGAGACGGACCCACACCGACGAACATTTCAAT 3763 Query 11784 GAAGTTTGCGGCAG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAG 11842 ||| | | | | | || ||||| ||| || || | | ||||||||| |||| || Sbjct 3762 GAAATCCGAGCCGGAAATGCTGAA-GAACGGGACGCTGGCCTCACCAGCTGTGGCCTTAG 3704 Query 11843 CGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGG 11902 | | || |||||||||||||| |||| || | || || || || ||||||||||| Sbjct 3703 CCAACAGCGTCTTACCCGTACCGGGTGGGCCGACAAGCAGAGCACCCTTGGGGATCTTGG 3644 Query 11903 CACC 11906 |||| Sbjct 3643 CACC 3640 >seq1734 Length=28608 Score = 123 bits (136), Expect = 3e-23 Identities = 149/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT-TC 11735 |||| ||||||||||||||||||||| | ||| |||||| || | | || | | || Sbjct 22556 CCGATAGCGTCAATCTCATCGATGAAGATGATGCACGGTGCCTTC-CGCTTGGCCGACTC 22614 Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGC 11795 ||| || ||||| || || || || ||||||||| ||||||| |||| | || | Sbjct 22615 GAAGAGGTCACGCACGCGACGGGCGCCCACACCTACGTACATCTCTTCGAACTCTGATCC 22674 Query 11796 AGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTT 11855 |||| | | | ||| || || || |||||||||||| || |||||||| || ||||| Sbjct 22675 AGAAGAATAGAAGAACGGGACGCCAGCCTCACCAGCGATAGCACGAGCGAGTAGCGTCTT 22734 Query 11856 ACCCGTACCAGGTGCACCAG 11875 |||||||||||| | |||| Sbjct 22735 ACCCGTACCAGGCGGGCCAG 22754 >seq4811 Length=93528 Score = 102 bits (112), Expect = 1e-16 Identities = 135/185 (73%), Gaps = 3/185 (2%) Strand=Plus/Minus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 || || || ||| ||||||||| || ||||| || || |||||||| || | ||| Sbjct 47837 CCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCATGAGGCCGCGCTTC 47778 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 |||||||||||||||| || ||| || || ||||||||||| |||||| |||||| Sbjct 47777 TTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCTTCCACAGCAGCGAAA 47718 Query 119634 GCGAATAGACGCTC--AGCAAAAGG-TCGAGACTTGTCGAACCACTTGAGAGCCCAGTTG 119690 || | || ||||| | | ||| | | | |||| |||||||||| ||||||| Sbjct 47717 GCCAGCAGGCGCTCCGGGTAGGAGGATACACGCGGGTCGCACCACTTGAGTGCCCAGTGA 47658 Query 119691 GCCTT 119695 ||||| Sbjct 47657 GCCTT 47653 >seq6376 Length=24334 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/166 (72%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 168429 CTTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGAC 168488 |||||| | | || || || ||||| | |||||| || || || | |||||| | || Sbjct 14469 CTTACCTCTCAACGGGAAGACACCATAGTAATCTCTGCCAACAACAGCGAGACCGCCCAC 14528 Query 168489 AGCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACACTTTCCAGACTGT-- 168546 || | || || || ||||| ||||| || | ||| || || || | || || | Sbjct 14529 GGCAACCGTCTTGGCGGAATCTCCCTCCGTAAGGATCAGAGTGCAGT--CCTTGCTCTTC 14586 Query 168547 GCCGTACCAGCTTTGTTCGCATCGTCCAATTTGGGGATACCAGTGA 168592 || |||||||| | ||| |||||||||| ||||||||||||||||| Sbjct 14587 GCGGTACCAGCGTGGTTGGCATCGTCCAGTTTGGGGATACCAGTGA 14632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588925841331400