Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4890 170 2e-37 seq4811 120 4e-22 seq2980 93.3 5e-14 seq1734 86.0 7e-12 >seq4890 Length=10138 Score = 170 bits (188), Expect = 2e-37 Identities = 674/1041 (65%), Gaps = 37/1041 (4%) Strand=Plus/Minus Query 106278 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 106337 ||||||| ||||| || || || | |||||| || | || ||||| || ||||| || | Sbjct 4956 CATCCGCCAGACCCTGGACGCCAATACCAATGGGACGATGGCGCATGTTGGACTTGCGAG 4897 Query 106338 CAGTCT-CAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATC 106396 | ||| |||| |||||| |||| ||| ||||| ||| || || || | | | Sbjct 4896 CC-TCTGCAACAGGATAATAATTGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACC 4838 Query 106397 TTTGTGATTTCATGAAGTTTTTCATAATCAAA-AGTGCGAGTCTCTTCATTGACATACTT 106455 || | |||| ||| | | || || || | || | ||| ||| || | Sbjct 4837 TTGACCACCTCATACAGTCTCTTGTAGTCGAACACACCG----TTTTCC---ACAAACAT 4785 Query 106456 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 106515 || || || | || ||||| ||||| || ||| |||||| |||||||| | Sbjct 4784 AGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTGTACTCCAT 4725 Query 106516 AATTTCTGTACACAAGTTG---GAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTT 106572 | ||| || |||||| |||| ||||| ||||| |||| ||||| ||| Sbjct 4724 GACTTCGCAGCATAAGTTGCTGGAACGG---ATCGTACCCAAGTTCTGCTGGTTCGACTT 4668 Query 106573 TTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAG 106632 ||| || ||||||||||||||| ||||| |||||||| |||| | | || Sbjct 4667 GCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAG 4608 Query 106633 AATTGCCTTCCACACATCGGCGGCTG---GTACAATGGCGTTGGCCC--GTCCCTCCGCC 106687 || || ||||| || |||| || | || | | || | |||| ||| | Sbjct 4607 GATAGCGAACCACA-----GCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCTTC 4553 Query 106688 TCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGC 106746 ||||||||| || || ||||||||||| || ||| | || ||| | ||||| || || Sbjct 4552 TCGTACTTTTCATACAGAGCTTCAAACTCATCGCCC-CAGCACTCGTACAGACCAGGAGC 4494 Query 106747 CTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTC 106806 | || |||||||| | | ||| | ||| |||| || | ||||||||| || || Sbjct 4493 TTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATC 4434 Query 106807 TGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGA 106865 || | |||||| | |||| | || | | | | || | || | ||| ||||| Sbjct 4433 AGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGC-TCATTACCGTGGTTCT 4375 Query 106866 GTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG 106925 || | || |||||||| | | || |||||||| ||||| | |||| |||| | Sbjct 4374 TACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACG 4315 Query 106926 ATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAA 106982 | ||||| || || || | || | |||||||| || ||| ||||||| || || | Sbjct 4314 AGCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCA 4255 Query 106983 GCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCT 107041 ||| || ||||| || | || || || || || || || || | ||| |||| Sbjct 4254 ACATGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGAT-GTAGCTGTTAGTGGCG 4196 Query 107042 CTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCC 107101 | | | || || || || ||||| || ||||| || ||||| || || | | Sbjct 4195 CGGATGTTGTGCATACTGATACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGC 4136 Query 107102 GTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTG 107161 | || || | || || || | || ||||| |||| | || | ||||| ||| Sbjct 4135 TTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAACAAGAA 4076 Query 107162 GACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATA 107221 |||| ||| || | ||| || || || |||||||| || || || ||||| |||| | | Sbjct 4075 GACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGA-A 4017 Query 107222 CCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCC 107280 | | || ||||| ||||| ||||||| | || | ||||| | ||||||||| Sbjct 4016 CTTCTGCGACATGAGCTCGTACGTCTCCAGTGCGGACTTGATGTCGCTCTTGTGGATGCC 3957 Query 107281 GATGGCCACACGCATAAACAT 107301 | || ||||||| || ||| Sbjct 3956 TAACGCTACACGCAGAATCAT 3936 >seq4811 Length=93528 Score = 120 bits (132), Expect = 4e-22 Identities = 379/575 (66%), Gaps = 12/575 (2%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| || ||||||||||| || | || || | ||||| Sbjct 48143 TACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATCATGTCCATC 48084 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 117105 ||||||| || ||||| |||| | || | ||| |||| | ||| ||||| Sbjct 48083 CAGTCAAAAGGGTTCTTAGCGTGGTAGATCTTGGACACACCAAGCGAGTAGAGCAGACGG 48024 Query 117106 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATT-ACA 117164 || | ||| |||||||||||| | |||| ||||||||||||| || || | ||| Sbjct 48023 TCAGCCACGAACTCAATGTACTGGCACATGAGGGCAGAGTTCATACCAATCAGCTCCACA 47964 Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224 ||||| | ||| | ||| | | ||||||| | || || || | ||| |||| Sbjct 47963 -GGGAGCGAGTCACGCACAAACTCGTGCTCAATCACCACAGCGTCACGAATGATCTCGTG 47905 Query 117225 GATA-GTTTCGGTAGTGGGTCTATTAC--GCAAAGTCTTGAAGAGCTCCACGGCAAACTC 117281 | | | || | | | | | || || | | || || || ||| || || Sbjct 47904 TACACGGCTCTCTGGCAGCTTGGTGACCAGCTTGGAGTACAAAAGG--CA-GGCGAAGTC 47848 Query 117282 CTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAG 117341 | ||| | ||||| || || || || || || ||||||| || || |||||||| Sbjct 47847 CGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCATGAG 47788 Query 117342 ACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 117401 || |||||||| | |||| | || | |||||| || || ||||||||||| || ||||| Sbjct 47787 GCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCTTCCAC 47728 Query 117402 ACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGAC-TTTGTGTCAAACCATTTCA 117460 | || || || | |||||||| | | ||||| || || | ||| |||| || | Sbjct 47727 AGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAG-GATACACGCGGGTCGCACCACTTGA 47669 Query 117461 TTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCT 117520 |||||| | ||||||||| | ||| || | || | ||||| | | || | Sbjct 47668 GTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGCAGGAGATGGT 47609 Query 117521 TCTTTTCAGATC-CATCCTTAATGTATTTGTCAAT 117554 ||| || |||| | ||||| ||||| ||||||| Sbjct 47608 CCTTCTC-GATCGCGTCCTTGATGTACGTGTCAAT 47575 >seq2980 Length=80372 Score = 93.3 bits (102), Expect = 5e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 169326 AGCTGTGCCACTGAAGCGTCGCGGACATTCTTACACTTCCCACGGAGAGGAAAGACGCCA 169385 |||||||| || | || || || ||||| | || ||||| ||||| ||||| || Sbjct 15545 AGCTGTGCGACCGTGGCATCACGTACATTTAGAAGTTTACCACGCAGAGGGAAGACACCG 15604 Query 169386 TAGTGATCACGTCCAACGACGGAGAGACCCGCGACCGCAAGGGTTTTCGCTGAATCACCC 169445 || || || ||||||||||||| || || || || ||||| | ||||||||||||||| Sbjct 15605 TACTGGTCGCGTCCAACGACGGCCAGCCCAGCCACTGCAAGAGCCTTCGCTGAATCACCC 15664 Query 169446 TCCGTGACAAT 169456 ||||| | ||| Sbjct 15665 TCCGTCAAAAT 15675 >seq1734 Length=28608 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/188 (71%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGC--GGGCGATTTCAAAGA 9429 || ||||||||||| ||||||| || || ||| | || ||| || ||| | | |||| Sbjct 22562 GCGTCAATCTCATCGATGAAGATGATGCACGGT-GCCTTCCGCTTGGCCGACT-CGAAGA 22619 Query 9430 GATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9489 | || || || | |||||||||||| || ||||||| | || | || | ||| Sbjct 22620 GGTCACGCACGCGACGGGCGCCCACACCTACGTACATCTCTTCGAACTCTGATCCAGAAG 22679 Query 9490 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9549 | | || ||| ||||| || ||||| || || || || ||||| || |||||||||| Sbjct 22680 AATAGAAGAACGGGACGCCAGCCTCACCAGCGATAGCACGAGCGAGTAGCGTCTTACCCG 22739 Query 9550 TACCTGGC 9557 |||| ||| Sbjct 22740 TACCAGGC 22747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589930555760120