Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq4890 237 3e-57 seq4811 206 5e-48 >seq4890 Length=10138 Score = 237 bits (262), Expect = 3e-57 Identities = 714/1087 (66%), Gaps = 44/1087 (4%) Strand=Plus/Minus Query 212909 GTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGG 212968 ||| || ||| ||| ||||| | | ||| | | | ||| | ||| || ||||| || Sbjct 5342 GTTAACGATCGTGAACTCACCAGCCAACACACGACGGTTGTACATGTTGGACGTGTAAGG 5283 Query 212969 CTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCAC 213028 |||||| ||||||||| ||||| ||||| || ||| |||||| |||||||| || || Sbjct 5282 CTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATGGGTGCAAC 5223 Query 213029 CAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGG-CGCCGA--AGCTCTGCCCAGTC 213085 ||| || ||| | | ||||| | |||| | | | || | ||||||| Sbjct 5222 CAGCAGCGAGTTACGGAGACCGTGTTTA---ATGACGTCATCTTTTAGTGCGGCCCAGTT 5166 Query 213086 CCATCTGCCAGAC--AGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCT 213143 ||| ||||| |||| | ||| ||||||||| ||||| ||||| || Sbjct 5165 CCAAAGCCCAGATGAAGGTG--------TGACGCCCCACATGTCGAACTGGAAGATACCC 5114 Query 213144 TTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAG 213203 || || | || ||||||| | | ||| || || ||| |||| | ||| Sbjct 5113 TTACTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCCAATTCCGTGGCAATCTCCATC 5054 Query 213204 GACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG-GC 213262 |||| || || |||||| ||||||| || || || || | | |||| | ||| | || Sbjct 5053 GACGTCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAA-TTCACGAGC 4995 Query 213263 CTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCC 213322 | ||| | ||| | ||||| | |||| |||| ||||| |||||||| || Sbjct 4994 TTGCGGGCTCTCGAACGCGTAGTTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCC 4935 Query 213323 GATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGT 213381 || || ||||| | || | || ||| |||||| |||| ||| | | || ||| | | Sbjct 4934 AATACCAATGGGACGATGGCGCATGTTGGACTTGCGAGC-CTCTGCAACAGGATAATAAT 4876 Query 213382 TGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACT 213441 || |||||||| ||||||||||||||| ||| ||| ||| || | ||| || Sbjct 4875 TGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTGACCACCTCATACAGTCTCT 4816 Query 213442 CGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGT 213501 || | |||||| |||| | ||||||| |||||| || | |||| || Sbjct 4815 TGTAGTCGAACACA------CCGTTTTCCACAAACATAGGCAGCGCCACAGACGCCAAGT 4762 Query 213502 TGCAAACGGCCACCTCCT-GAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTG 213560 |||| || |||||||| | | | | | ||||||||||||| ||| ||| | ||||||| Sbjct 4761 TGCACACTGCCACCTCATCGGGTGAC-GTGTACTCCATGACTTCGCAGCATAAGTTGCTG 4703 Query 213561 CATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGC 213620 | ||||| || |||| |||||| ||||| ||||| ||| || | |||||||||||| Sbjct 4702 GAACGGATCGTACCCAAGTTCTGCTGGTTCGACTTGCGGTTAGCTGCGTCCTTGTAGAGC 4643 Query 213621 ATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCC 213680 ||| |||| || ||||| | ||| | | || || | ||| || | | || Sbjct 4642 ATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACCACAGCTGCTGAGCG 4583 Query 213681 TTGACCACCCGCCTGACAGCTCCGGGCGTAGC--CTCGTACTGTTCGTAGAGCTCGTTGA 213738 |||| | || || || | | | | | |||||||| ||| || || | | | Sbjct 4582 TTGA----TTGTCTTAC-GCGCACGTCCTTCCTTCTCGTACTTTTCATACAGAGCTTCAA 4528 Query 213739 ATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGC---GGGACACATGAGGCTCC 213795 | || | ||||||| | || ||| || ||| | | | |||||| | | |||| Sbjct 4527 ACTCATCGCCCCAGCACTCGTACAGACCAGGA---GCTTCGTTGGGACAGAACAAACTCC 4471 Query 213796 AGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACA 213855 | | || | | ||||||| |||||| || || || |||||||||||| |||| Sbjct 4470 ACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCGTAAAACA 4411 Query 213856 GGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGA 213915 ||| | || | | || || ||| || |||||||| || || || || | Sbjct 4410 AGTCGCGGGCGCGGTGCAGCTCATTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACA 4351 Query 213916 TGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTT---GCCGCCCT 213972 ||| |||||||||||||||| |||||| || || | |||| | ||| ||||||| Sbjct 4350 CGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCTCCGCCCT 4291 Query 213973 GGTCCAC 213979 ||||||| Sbjct 4290 GGTCCAC 4284 >seq4811 Length=93528 Score = 206 bits (228), Expect = 5e-48 Identities = 484/726 (67%), Gaps = 11/726 (2%) Strand=Plus/Minus Query 47954 AGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 ||||| | || || ||| |||| ||||| | ||||||||| |||||| || || Sbjct 48032 AGCAGACGGTCAGCCACGAACTCAATGTACTGGCACATGAGGGCAGAGTTCATACCAATC 47973 Query 48014 AGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 || ||| || | | | | |||||| | ||| ||| ||| || || | | Sbjct 47972 AGCTCCACAGGGAGCGAGTCACGCACAAACTCGTGCTCAATCACCACAGCGTCACGAATG 47913 Query 48074 ATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 |||| | || ||| ||||| | ||| || ||| ||||| || | | |||| Sbjct 47912 ATCTCGTGTACACGGCTCTCTGGCAGCTTGGTGACCAG---CTTGGAGTACAAAAGGCAG 47856 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 || |||||| |||||| ||| ||||| || ||||||||| |||| ||||||| ||||| Sbjct 47855 GCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGACCG 47796 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||||| || | || || ||||| || || | ||||||||| |||||||||||| Sbjct 47795 GGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATG 47736 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG-AGAT 48312 || ||||| || ||||| || || | ||| | | || || | | | | | Sbjct 47735 CCTTCCACAGCAGCGAAAGCCAGCAGGCGCTC-CGGGTAGGAGGATACACGCGGGTCGCA 47677 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA 48372 ||| || ||||||| ||||||||| ||| || || || ||||| ||||| || | Sbjct 47676 CCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGCAG 47617 Query 48373 GAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACAT 48429 ||| | | ||| |||||| | || || | ||||||| || ||| | Sbjct 47616 GAGATGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAG---TGAGTAGAC 47560 Query 48430 CTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACAC 48489 ||| ||||| | ||||| || ||||||||||| || |||||| | ||||| ||| Sbjct 47559 CTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGGCAC 47500 Query 48490 CTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGC 48549 ||||||||| || ||| || || ||||| || || || || || || || Sbjct 47499 CTGCACTTCGTTGCTGAAGTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTGGCTGC 47440 Query 48550 AAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCC 48609 |||||||| || || || || | ||| || |||||||||| ||||| ||||| | Sbjct 47439 GAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTTGCTCCAGTC 47380 Query 48610 CTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTT 48669 || | ||| | | ||||| | || || | ||||||||||| || ||||| || Sbjct 47379 CTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCTTTCTT 47320 Query 48670 GTACAT 48675 |||||| Sbjct 47319 GTACAT 47314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931453468337920