Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4811 179 7e-40 seq4890 174 3e-38 >seq4811 Length=93528 Score = 179 bits (198), Expect = 7e-40 Identities = 551/848 (65%), Gaps = 21/848 (2%) Strand=Plus/Plus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| ||||||||||||| || | ||| |||||| || || ||| | || || | Sbjct 47308 TGGCAGATGTACAAGAAAGCCGAGGCCTCCTTCTGGACGGCTGAGGAGCTCGACCTTGTG 47367 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTG 25599 | ||| | | | |||| | || | | |||||| || || ||||| ||||| Sbjct 47368 CACGACCTCAAGGACTGGAGCAAGCTCACGGACAACGAGCGACACTTCATCAAGCACGTG 47427 Query 25600 TTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACC 25659 | || ||||| |||||| ||| ||||| ||||||||||| || | || |||| | Sbjct 47428 CTCGCCTTCTTCGCAGCCAGTGACGGTATCGTGAACGAGAACTTGGCCATGAACTTCAGC 47487 Query 25660 AGGGAAGTGCAGTACGTG---GAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAA 25716 | ||||||||| ||| ||||| || ||||| || |||||||| ||||| || Sbjct 47488 AACGAAGTGCAG---GTGCCCGAGGCTCGTTGCTTCTATGGCTTCCAGATCGCCATTGAG 47544 Query 25717 AATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGAG 25776 || | ||||| ||||| || | ||| | |||||||| | |||| |||| Sbjct 47545 AACATTCACTCGGAGGTCTACTCACTGCTCATTGACACGTACATCAAGGACGCGATCGAG 47604 Query 25777 AGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGG 25836 | || | || | ||||||| ||| ||| || | ||| || |||||| | ||| Sbjct 47605 AAGGACCATCTCCTGCGTGCCATTGAGACCATCCCTTGTGTCACGAAGAAGGCTCACTGG 47664 Query 25837 GCCATGAAGTGGATCAACA-GCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGC 25895 || | |||||| | || || | || | | ||||| ||| | || || || Sbjct 47665 GCACTCAAGTGGTGCGACCCGCGTGTATCCTCCTACCCG-GAGCGCCTGCTGGCTTTCGC 47723 Query 25896 TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAGA 25954 ||||||||| |||||||| ||| || || || ||| ||||||| ||||| ||| || Sbjct 47724 TGCTGTGGAAGGCATCTTCTTCTCGGGCTCTTTCTGC-TCCATCTTTTGGCTAAAGAAGC 47782 Query 25955 AGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCC 26014 || ||||||||| ||| ||| || |||||||||||||| | |||||||| | | Sbjct 47783 GCGGCCTCATGCCCGGTCTGAGCTTCTCGAACGAGCTCATCAGTCGTGACGAGGGCATGC 47842 Query 26015 ACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAGA 26074 ||| || || |||||||| | ||| | | | || | ||| || || | |||| Sbjct 47843 ACACGGACTTCGCCTGCCTTTTGTACTC---CAAGCTGGT-CACCAAGCTGCCAGAGAG- 47897 Query 26075 CCGTCTACA--GTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNN 26132 |||| |||| ||||| || ||||||| ||| ||| | |||||| Sbjct 47898 CCGTGTACACGAGATCATTCGTGACGCTGTGGTGATTGAGCACGAGTTTGTGCGTGACTC 47957 Query 26133 NNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGT 26192 | || |||||| |||||| |||| |||||||||| || Sbjct 47958 GCTCCCTGTGGAGCTGATTGGTATGAACTCTGCCCTCATGTGCCAGTACATTGAGTTCGT 48017 Query 26193 GGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGC--CTAACCCG 26250 ||| |||| |||||| | | ||| || | ||| ||||| |||| ||||| Sbjct 48018 GGCTGACCGTCTGCTCTACTCGCTTGGTGTGTCCAAGATCTAC--CACGCTAAGAACCCT 48075 Query 26251 TTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTC 26310 || |||| ||||| | || || | |||| ||||||||||| || || ||| | || Sbjct 48076 TTTGACTGGATGGACATGATCTCTCTCCAAGGCAAGACCAACTTTTTCGAGAAGCGTGTG 48135 Query 26311 GGCGACTA 26318 ||||| || Sbjct 48136 GGCGAGTA 48143 >seq4890 Length=10138 Score = 174 bits (192), Expect = 3e-38 Identities = 645/1001 (64%), Gaps = 51/1001 (5%) Strand=Plus/Minus Query 221510 TCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCT 221569 || ||||| ||||| || || ||||| ||||| | || | | ||||||| | || Sbjct 4954 TCCGCCAGACCCTGGACGCCAATACCAATGGGACGATGGCGCATGTTGGACTTGCGAGCC 4895 Query 221570 TCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTA 221629 |||| || |||||| | ||||||||||| | ||||||||||| | ||||| || || Sbjct 4894 TCTGCAACAGGATAATAATTGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTG 4835 Query 221630 ACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCC 221689 |||||||| ||| ||| || | |||||| |||| |||| Sbjct 4834 ACCACCTCATACAGTCTCTTGTAGTCGAACACA---------CCGTT---------TTCC 4793 Query 221690 ACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTG--G 221747 ||||| || || || |||| ||| ||||| |||||||| || | || | Sbjct 4792 ACAAACATAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCG--GGTGACG 4735 Query 221748 TATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGAT 221807 | |||| |||| || || | ||||||| | ||| || |||| || | || | Sbjct 4734 TGTACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCCAAGTTCTGCTGGT 4675 Query 221808 TAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAG 221867 | |||||||| || || ||||||||||||||||| ||||| | || ||||| | ||||| Sbjct 4674 TCGACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAG 4615 Query 221868 CCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCACCGTCCT-----CTTGAC-TGCA 221920 | | || || | ||| || | ||| ||| | | ||| | | | | | | Sbjct 4614 CGTCTAGGATAGCGAACCACAGCTG-CTGAGCGTTGATTGTCTTACGCGCACGTCCTTCC 4556 Query 221921 CCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCC 221980 |||| |||||||||| ||||| | |||||| || || | ||||| | Sbjct 4555 TTCTCGTACTTTTCATAC-------AGAGCTT--CAAACTCATCGCCCCAGCACTCGTAC 4505 Query 221981 AGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTG---TTGTCTTTGACCCTC 222037 || || ||| | |||||| | || |||||| |||| ||| | | || ||| Sbjct 4504 AGACCAGGAGCTTCGTTGGGACAGAACAAACTCCA---CTTGCCATTGGCCTCCACTCTC 4448 Query 222038 TGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCC 222097 | ||||||||| || || | ||||||||| | ||| | || | || || ||| ||| Sbjct 4447 TTCATGAAGAGATCAGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCTCA 4388 Query 222098 ACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGA 222157 |||| ||| || | |||||||| ||||| || | ||| |||||||||||||||| Sbjct 4387 TTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAG 4328 Query 222158 TAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCG 222217 |||| || | | ||| ||||| || ||||| ||||| | || || Sbjct 4327 TAGATAGCGAACGAGCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCG 4268 Query 222218 TTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTAC 222277 || || | || | | || | | ||||| || ||||| ||||| ||||| Sbjct 4267 TTAAACACACGCAACATGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAG 4208 Query 222278 GCACCGCCGGCCCTCAGGTTACTGGCAGAC--ATGCCGATACCACCGGCGTGTTTCGAGA 222335 ||| | | ||| ||| || || |||||||| || || ||| |||| Sbjct 4207 CTGTTAGTGGCGCGGATGTT--GTGCATACTGATACCGATACCGCCCGCCCATTTAGAGA 4150 Query 222336 TCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCA 222395 | |||||| ||| || ||||| |||||||| |||||||| |||| | || Sbjct 4149 TACAGGCGCATTGCTTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCA 4090 Query 222396 GCAGAAAACAAGACGACATCTGA-GATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTG 222454 || |||||||| |||| |||| || ||| | | |||||| || || || || || Sbjct 4089 ATAGGAAACAAGAAGACAACTGAGGACGTGG-CGTGCCGGCGTTGAAGAGAGTAGGGGTG 4031 Query 222455 GCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTC 222495 ||||| || ||| | | ||||| || ||||||||||| Sbjct 4030 GCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTACGTCTC 3990 Score = 96.9 bits (106), Expect = 6e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 221155 GTACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCT 221214 ||||| ||| || ||| | || ||||| |||||||||||||||||||||||||||| Sbjct 5303 GTACATGTTGGACGTGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGA 5244 Query 221215 GGCGGTGGGCATGGGTGCCACCAGCAGACTGTTGCGCAGTCCG 221257 ||| || ||||||||||| |||||||| ||| || || ||| Sbjct 5243 GGCTGTCGGCATGGGTGCAACCAGCAGCGAGTTACGGAGACCG 5201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928765697254720