Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4811 185 1e-40 seq4890 141 1e-27 seq2076 134 2e-25 seq4898 127 2e-23 seq301 122 1e-21 seq3351 116 5e-20 >seq4811 Length=93528 Score = 185 bits (204), Expect = 1e-40 Identities = 222/299 (74%), Gaps = 2/299 (1%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 ||||||| |||||||| ||||||||||||||||| || ||| | |||| | ||| | Sbjct 47557 CCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGGCACCT 47498 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | || || || |||| ||||| ||||||| |||||| ||||| ||||| |||| Sbjct 47497 GCACTTCGTTGCTGAAGTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTGGCTGCGA 47438 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 | || || || ||||||||||| ||||| ||||||| ||| ||||| ||||| Sbjct 47437 AGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTTGCTCCAGTCCT 47378 Query 869811 CGGTGTCG-GCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | |||| || | ||||| | |||||| || ||||||| ||||||||||| || ||| Sbjct 47377 TGAGGTCGTGCAC-AAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCTTTCTTG 47319 Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 ||||||| ||| |||| || | | || ||||| || || || ||||||||||| || Sbjct 47318 TACATCTGCCACACTTCGTGTTCCTGAATGGGGAACAGCACGAAACGGTTGGGGTTCTC 47260 Score = 179 bits (198), Expect = 5e-39 Identities = 234/316 (74%), Gaps = 6/316 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||||| |||||||||||| ||| ||||||||||||||||||||| | ||| |||||| Sbjct 48152 GCCTTGGAGTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATC 48093 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTT-CGCATCCGAGCGACGC 868809 | |||||||| || ||||| | | |||| ||| | || || ||||| Sbjct 48092 ATGTCCATCCAGTCAAAAGGGTTCTTAGCGTGGTAGATCTTGGACACA-CCAAGCGAGTA 48034 Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 |||||| ||||| || || ||||| |||||||||||||||||| | | |||||| || || Sbjct 48033 GAGCAGACGGTCAGCCACGAACTCAATGTACTGGCACATGAGGGCAGAGTTCATACCAAT 47974 Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACG-A 868928 ||| |||| || ||||| || | ||||||||| | ||| ||| | || || || ||| | Sbjct 47973 CAGCTCCACAGGGAGCGAGTCACGCACAAACTCGTGCTCAATCACCACAGCGTC-ACGAA 47915 Query 868929 TGATCTGCCTGGGCACGTC-GGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAG 868987 |||||| | || |||| | | | ||||| |||| ||| | | ||| | |||||| Sbjct 47914 TGATCT-CGTGTACACGGCTCTCTGGCAGCTTGGTGACCAGCTTGGAGTACAAAAGGCAG 47856 Query 868988 GCAAAGTCGCAGTGCA 869003 || ||||| ||||| Sbjct 47855 GCGAAGTCCGTGTGCA 47840 Score = 150 bits (166), Expect = 2e-30 Identities = 208/286 (73%), Gaps = 5/286 (2%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| |||||||| | ||||| ||| || ||||||||||||||||||||| Sbjct 47837 CCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCATGAGGCCGCGCTTC 47778 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC-AAA 869298 || ||||||||||||| ||||||| ||||||||| |||||||| || || || || ||| Sbjct 47777 TTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCTTCCACAGCAGCGAAA 47718 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 ||| | || ||||| | ||| | || | | | || | |||||| | ||||| Sbjct 47717 GCC-AGCAGGCGCTCCGGGTAGGAG--GATACAC-GCGGGTCGCACCACTTGAGTGCCCA 47662 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418 || ||||| ||| | || | || | || || ||||| || | ||| |||||||| || Sbjct 47661 GTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGCAGGAGATGGTCCTTCTC 47602 Query 869419 GGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTCC 869464 | || |||||||| || ||||| || || || || ||| |||| Sbjct 47601 GATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTAGACCTCC 47556 >seq4890 Length=10138 Score = 141 bits (156), Expect = 1e-27 Identities = 213/303 (70%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || |||||| || ||||| |||||||||||||| || || | |||||| | | |||||| Sbjct 4295 GCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGGGATAATGCCGTT 4236 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 || |||||| ||||| | |||| | | |||||| | |||||| | Sbjct 4235 AGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTGAT 4176 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 ||||| ||||| ||| | || ||||| ||||| || || || |||||||| ||||| Sbjct 4175 ACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTGTCGTAAATGCC 4116 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 ||| || ||||| ||| ||| ||| || || || || || || || | | ||| Sbjct 4115 CTCAATAGAGTCATCCTGCATAGCCAATAGGAAACAAGAAGACAACTGAGGACGTGGCGT 4056 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA 1630361 ||||||||||||||| || || || || ||||| |||| | |||||||| ||||| Sbjct 4055 GCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTA 3996 Query 1630362 GGT 1630364 || Sbjct 3995 CGT 3993 Score = 134 bits (148), Expect = 2e-25 Identities = 269/406 (66%), Gaps = 6/406 (1%) Strand=Plus/Minus Query 1628198 TCGTACCCAGGTTCTGCTGGTTGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGG 1628257 ||||||||| |||||||||||| | | |||| | |||||||||| ||||||| ||| Sbjct 4695 TCGTACCCAAGTTCTGCTGGTTCGACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGG 4636 Query 1628258 GCGCGCCGGTCTCGATCTGCGCCGCGACGATGGCCGACCAGATCTGGCGCGCGGGCACGA 1628317 || | || ||||| ||||| || | | ||| || |||| | ||| | ||| || Sbjct 4635 GCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACCACAGCTGCTGAGCGTT---GA 4579 Query 1628318 CAGTC---CGCGCGCGGCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGC 1628374 ||| ||||| || || | ||||| | ||| Sbjct 4578 TTGTCTTACGCGCACGTCCTTCCTTCTCGTACTTTTCATACAGAGCTTCAAACTCATCGC 4519 Query 1628375 CGTAGCACTCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGG 1628434 | ||||||||| ||| || || || ||| ||||| || | ||| | |||| || Sbjct 4518 CCCAGCACTCGTACAGACCAGGAGCTTCGTTGGGACAGAACAAACTCCACTTGCCATTGG 4459 Query 1628435 TCACCGCGCGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCC 1628494 | || | | ||| ||||| ||| | |||||| |||||||| | |||||| || | Sbjct 4458 CCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGC 4399 Query 1628495 GGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCC 1628554 ||| | ||| || ||||||||||| || || || | |||| | ||||||||||| Sbjct 4398 GGTGCAGCTCATTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACACGTCGGCGTGCC 4339 Query 1628555 ACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 ||||||||| |||| || || | |||||||||||| || ||||| Sbjct 4338 ACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCTCCGCC 4293 >seq2076 Length=94050 Score = 134 bits (148), Expect = 2e-25 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| || ||| | | || || |||||||| |||||||||||||| || | ||| Sbjct 74918 GCCAGCTCACCGGGGAGCATGAGACGCACGGCAGTCTGGATCTCGCGGCTGGACAGCGTC 74977 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||| | ||| ||| ||||||||| | | ||||||| |||| |||||| Sbjct 74978 GACTTCTTGTTGTAACGCGACAGCTTGCCGGCCTCCGAGGCGATGCGCTCGAAAATGTCG 75037 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTG-TTGGAGATGCCCACGTCGGGGTGCAC 1254526 |||| ||||||||||||| |||||| | | | ||| ||| ||| |||||||||||| Sbjct 75038 TTGATGAACGAGTTCATGATCGACAT-GCCGCGCTTGCTGATACCCGTGTCGGGGTGCAC 75096 Query 1254527 CTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 ||| ||||||||||||||| | | ||||||||| Sbjct 75097 CTGACGCAGCACCTTGTAGATGTAGGTCGAGTACGA 75132 >seq4898 Length=18774 Score = 127 bits (140), Expect = 2e-23 Identities = 254/370 (69%), Gaps = 6/370 (2%) Strand=Plus/Minus Query 1573873 ACATGCCCAACCTCTTGCTGGCGGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGT 1573932 ||||| | || ||| | || | || || || || || || || || |||||||| || Sbjct 15123 ACATGACGAATCTCATCCTCTCCGGCCCTCCAGGAACTGGTAAAACAACGAGCATTTTGT 15064 Query 1573933 GTCTGGCGCGTGTCCTCTTGGGCGCGGCCGC-CGACG-AGGCCGTGCTCGAACTCAACGC 1573990 |||||||||| | || | || || | || ||| | |||| ||||| || ||||| || Sbjct 15063 GTCTGGCGCGCGAGCTGCTCGGTGC--CAGCACGAAGCAGGCGGTGCTGGAGCTCAATGC 15006 Query 1573991 GTCGGACGAGCGCGGCGTCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAG 1574050 ||| || || ||||| ||||| || |||| | |||||| ||| ||| Sbjct 15005 GTCCGATGATCGCGGTATCGACACGGTACGCAGTAAGATCAAGATGTTCGCGCAGCAGAA 14946 Query 1574051 GATCGAC-CTGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCA 1574109 | | ||| || || || |||||||||||| | |||| | ||||||||||||| | | Sbjct 14945 GGT-GACACTTCCCCCTGGACGCCACAAGATCGTCATATTGGACGAGGCCGACTCAATGA 14887 Query 1574110 CGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCT 1574169 | | || ||||||||||| || || || ||||| | | | |||||||| | Sbjct 14886 CAGCTGCAGCCCAGCAGGCTCTACGACGTACTATGGAGATCTTCTCGGCAACGACGCGAT 14827 Query 1574170 TTGCCCTGGCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCA 1574229 | || |||| ||||||| || | | | |||| ||| || | || ||||||||||||| Sbjct 14826 TCGCATTGGCCTGCAACAACTCCACCAAGATCATTGAGCCCATTCAGAGTCGCTGCGCCA 14767 Query 1574230 TTCTGCGCTT 1574239 | ||||| || Sbjct 14766 TCCTGCGTTT 14757 >seq301 Length=40331 Score = 122 bits (134), Expect = 1e-21 Identities = 287/431 (67%), Gaps = 2/431 (0%) Strand=Plus/Plus Query 18060 CATGAGCACATTCGGCAAGGTATTTAGGGTCACCACCTTTGGCGAGTCGCACGGGGCGGG 18119 ||||||||| |||||| | || | || || ||||| |||||||||||| | ||| Sbjct 3229 CATGAGCACCTTCGGCCGCTTCTTCCGCGTGACGACCTTCGGCGAGTCGCACTGCAAGGG 3288 Query 18120 CGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCACTGGCCGAGGCCGACATCCA 18179 ||| ||||||||| | || ||||| || |||| | | || | ||||| |||||||| Sbjct 3289 CGTGGGCTGCATCGTGGATGGCGTTCCCCCGTCGCTCGCTTTGACAGAGGCTGACATCCA 3348 Query 18180 GCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAGCC 18239 ||| ||| | || || || || |||||| || || | || |||||| ||||| Sbjct 3349 GCCGCAGCTCACGCGCCGTCGCCCCGGCCAGAGCAAGCTCACGACCCCGCGCGACGAGAA 3408 Query 18240 CGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGG 18299 || || | ||| | ||||| ||||| ||| ||||||| ||| |||| | | Sbjct 3409 GGACATGGTGACTATCATGAGCGGCACTGAGAAGGGCTTCACGCTTGGCACGCCGCTTGC 3468 Query 18300 CCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGGTGCC 18359 ||||| ||| ||||| || ||| || || || || ||| ||||| Sbjct 3469 ACTCTTCGTGCCCAACGAAAACGTGCGCCCTAAGGATTACAAGGAGATGGATCTTGTGCC 3528 Query 18360 GCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCG-G 18418 || || ||||| |||||||| ||| | |||||||||| | | | | | | Sbjct 3529 TCGCCCGGGCCACGCAGACTACACGTACCAGATGAAGTACGGCA-CGCGCGCTAGCAGCG 3587 Query 18419 GCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCG 18478 |||| ||||| | ||| ||||| ||| | || || || || ||||| || |||| Sbjct 3588 GCGGTGGCCGTGCCAGTGCTCGCGAAACCATTGGCCGTGTAGCAGCTGGCGCTGTGGCCG 3647 Query 18479 AGAAATGGCTC 18489 |||| |||||| Sbjct 3648 AGAAGTGGCTC 3658 Score = 105 bits (116), Expect = 8e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 19065 GTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTGCTTTGACAAGATC 19124 || ||||| ||| ||||||| ||| | || || || ||||| || || |||||||| Sbjct 4094 GTCACGTGTGTGATCCGCAACGCGCCCGTGGGTCTGGGTGAGCCATGTTTCGACAAGATG 4153 Query 19125 GAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGGATTCGAGATTGGC 19184 |||||| || || ||||||||| |||| ||||||||||||||||| |||||||| ||| Sbjct 4154 CAGGCCGTCCTTGCACACGCCATGATGTCCATCCCGGCCACCAAGGGCTTCGAGATCGGC 4213 Query 19185 AGCGGGTT 19192 ||| || Sbjct 4214 TCCGGTTT 4221 >seq3351 Length=83448 Score = 116 bits (128), Expect = 5e-20 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| || ||| | | || || ||||| || ||||||||||| || || | ||| Sbjct 26373 GCCAGCTCACCGGGGAGCATGAGACGCACAGCCGTCTGGATCTCACGGCTGGACAGGGTG 26432 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||| | ||| ||| ||||||||| | ||||||| |||| |||||| Sbjct 26433 GACTTCTTGTTGTAACGCGACAGCTTGCCGGCCTCCGAAGCGATGCGCTCGAAAATGTCG 26492 Query 1254468 TTGACAAACGAGTTCATGACCGACAT-CGACTTGTTGGAGATGCCCACGTCGGGGTGCAC 1254526 |||| || |||||||||| |||||| | || ||| ||| ||| |||||||||||| Sbjct 26493 TTGATGAAGGAGTTCATGATCGACATTCCACGC-TTGCTGATACCCGTGTCGGGGTGCAC 26551 Query 1254527 CTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 ||| ||||||||||||||| | | ||||||||| Sbjct 26552 CTGACGCAGCACCTTGTAGATGTAGGTCGAGTACGA 26587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106580093314721