Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq4890 123 2e-23 seq4260 95.1 1e-14 seq4261 93.3 4e-14 seq1938 89.7 5e-13 seq2993 82.4 7e-11 >seq4890 Length=10138 Score = 123 bits (136), Expect = 2e-23 Identities = 355/539 (66%), Gaps = 33/539 (6%) Strand=Plus/Minus Query 138484 TCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAA 138543 || || |||||||| |||| | || | || ||||| ||||| || ||||| ||| Sbjct 5359 TCCTTCATCAGATACTTGTTAACGATCGTGAACTCACCAGCCAACACACGACGGTTGTAC 5300 Query 138544 ATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCG 138603 |||||| ||| ||||||| | || |||||||| ||||| ||||||||||||| || Sbjct 5299 ATGTTGGACGTGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCT 5240 Query 138604 GTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGT--TCCT 138661 ||||||||| || |||| || || || || | |||||| ||| ||| || | Sbjct 5239 GTCGGCATGGGTGCAACCAGCAGCGAGTTACGGAGACCGTGTTTAATGA--CGTCATCTT 5182 Query 138662 TGAGCGACGACCAGTCCCACAAATC-GCT--AGGTTTTTTGTTCCACATATCGTACTGTA 138718 | || | | ||||| ||| | | | | |||| | | |||||| ||| |||| | Sbjct 5181 TTAGTGCGGCCCAGTTCCAAAGCCCAGATGAAGGTGTGACGCCCCACATGTCGAACTGGA 5122 Query 138719 ACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCA 138778 | || ||| ||| || ||| ||| | | ||| ||||| ||| || || || | Sbjct 5121 AGATACCCTTACTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCCAATTCCGTGGCAA 5062 Query 138779 ACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCA 138838 ||| | || ||| | ||| || |||| || || ||| || || | ||| || Sbjct 5061 TCTCCATCGACGTCTCCATGGCAGCAAAGTAGATCGTCTCG--AAGATG-TTCTTGTTCA 5005 Query 138839 AT---CGGGCCTCGGCGCTCTCGTACG------GCATGCGGAGCATCGTGAACGCGTCGG 138889 || || || | | ||||||| ||| |||| ||| ||||||| || | Sbjct 5004 ATTCACGAGCTTGCGGGCTCTCGAACGCGTAGTTCATGAGGA------TGAACGCATCCG 4951 Query 138890 CCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCG---- 138945 |||| || || ||||| | || | || |||||||||| || ||| ||||| Sbjct 4950 CCAGACCCTGGACGCCAATACCAATGGGACGATGGCGCATGTTGGAC----TTGCGAGCC 4895 Query 138946 GCTTCGATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTT 139004 || | | ||||||||| || || ||||||| ||||| | || ||| || |||||| Sbjct 4894 TCTGCAACAGGATAATAATTGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTT 4836 >seq4260 Length=9660 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || ||||||||||| ||||| ||||| || || || || || || ||||||||||| Sbjct 9660 GTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAGCGTTTGATCTTC 9601 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 || || || ||||||||||| | | || || || ||||| || ||||| || Sbjct 9600 GCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCT 9541 Query 24899 ACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||| ||||| |||| |||| || || Sbjct 9540 ACACTCCACCTGGTGCTGCGTCTGCGTGGCGG 9509 >seq4261 Length=68810 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || | ||||| || || || ||||| || || || | | Sbjct 156 GATGCAGATTTTCGTGAAGACCTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTC 97 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | || || ||||||||||| ||||| ||||| || || || || || Sbjct 96 GGACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCA 37 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || ||||||||||| || || || ||||||||||| Sbjct 36 GCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGA 1 >seq1938 Length=18534 Score = 89.7 bits (98), Expect = 5e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 24697 TGATACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGA 24756 ||| | |||||||||||| | || ||| | ||||| || || ||||| ||||| || || Sbjct 180 TGAGAAGATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACCCTCGACGTGGA 121 Query 24757 AGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCC 24816 | | ||| | | || | || || || ||||| || ||||| ||||| || || || Sbjct 120 GCCGTCGGACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCC 61 Query 24817 CGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || || || ||| ||||||| || || || ||||| ||||| Sbjct 60 TGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGA 19 >seq2993 Length=38503 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || || |||||||| || || | | Sbjct 7488 ATGCAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 7429 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || | || || || || ||||| ||||| || ||||| || || || || Sbjct 7428 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATCCCGCCTGACCAG 7369 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || || ||||||| ||||| || ||||| ||||| Sbjct 7368 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGA 7334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449859285595640