Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq4811 219 7e-51 seq2076 174 2e-37 seq3351 152 8e-31 seq4890 136 6e-26 seq4898 132 8e-25 seq6241 96.9 5e-14 >seq4811 Length=93528 Score = 219 bits (242), Expect = 7e-51 Identities = 248/329 (75%), Gaps = 9/329 (3%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| |||||||| | ||||| |||| || ||||||||||||||||||||| Sbjct 47837 CCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCATGAGGCCGCGCTTC 47778 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC-AAA 794459 || ||||||||||||| |||||| ||||||||| |||||||| || || || || ||| Sbjct 47777 TTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCTTCCACAGCAGCGAAA 47718 Query 794460 GCCGACGAGCCGCTC--GGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCC 794517 ||| | || ||||| || | || | || || || | |||||| | ||| Sbjct 47717 GCCAGC-AGGCGCTCCGGGTAGGAGGATACACGCGG-----GTCGCACCACTTGAGTGCC 47664 Query 794518 CACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTC 794577 || | ||||| ||| | || | || | || || ||||| || | ||| ||||||||| Sbjct 47663 CAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGCAGGAGATGGTCCTTC 47604 Query 794578 TCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTT 794637 |||| || |||||||| ||| ||||| ||||| || |||||| ||| ||||| ||||| Sbjct 47603 TCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTAGACCTCCGAGTGAATGTTC 47544 Query 794638 TCGATGGCGATCTGGAAGCCATAAAAGCA 794666 || |||||||||||||||||||| ||||| Sbjct 47543 TCAATGGCGATCTGGAAGCCATAGAAGCA 47515 Score = 176 bits (194), Expect = 7e-38 Identities = 230/313 (73%), Gaps = 4/313 (1%) Strand=Plus/Minus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 ||||| ||||||| ||||||||||| ||| ||||||||||||||||||||| | ||| Sbjct 48158 ACGCCGGCCTTGGAGTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGA 48099 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCAC-CCGAG 794011 ||||||| |||||||| || ||||| | ||||| ||| ||| || || Sbjct 48098 GAGATCATGTCCATCCAGTCAAAAGGGTTCTTAGCGTGGTAGATCTTGGA-CACACCAAG 48040 Query 794012 CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCAT 794071 ||| ||||| ||||| || ||||| ||||||||||||||||||||||| | |||||| Sbjct 48039 CGAGTAGAGCAGACGGTCAGCCACGAACTCAATGTACTGGCACATGAGGGCAGAGTTCAT 47980 Query 794072 GCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 || || ||| |||| || ||||| || | |||||||| | ||| ||| | || || || Sbjct 47979 ACCAATCAGCTCCACAGGGAGCGAGTCACGCACAAACTCGTGCTCAATCACCACAGCGTC 47920 Query 794132 GATGATGATCTGCCTGGGCACGTCGGAC-GACGGCTTGTCGACGAGCATCGTGTAGAGCA 794190 ||||||| | || |||| | | | | ||||| ||| ||| | | ||| | | Sbjct 47919 ACGAATGATCT-CGTGTACACGGCTCTCTGGCAGCTTGGTGACCAGCTTGGAGTACAAAA 47861 Query 794191 GGCAGGCAAAGTC 794203 ||||||| ||||| Sbjct 47860 GGCAGGCGAAGTC 47848 Score = 172 bits (190), Expect = 9e-37 Identities = 203/271 (75%), Gaps = 8/271 (3%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 |||||||| || || || || || ||||| ||||| |||||| |||||| ||| Sbjct 47510 GCCTCGGGCACCTGCACTTCGTTGCTGAAGTTCATGGCCAAGTTCTCGTTCACGATACCG 47451 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||||| ||||| |||||||| ||||||||||| ||||| ||||||| ||| ||||| Sbjct 47450 TCACTGGCTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGC 47391 Query 796270 GAGACCCAGTGGACCGT---GTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 | ||||| || | |||| | ||||||| |||||| || ||||| |||||| Sbjct 47390 TTGCTCCAGT---CCTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAG 47334 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCATA-TCCGTTGGTAGCGGATGGGGAACAGAACAAA 796385 |||||||| || |||||||||| ||| | | || || | | ||||||||||| || || Sbjct 47333 GCCTCGGCTTTCTTGTACATCTGCCACACTTCG-TGTTCCTGAATGGGGAACAGCACGAA 47275 Query 796386 GCGATTGGGGTTCTCGCGTAGCAGCGGCTCG 796416 || ||||||||||| || | ||||||| Sbjct 47274 ACGGTTGGGGTTCTCAACGAGGAACGGCTCG 47244 >seq2076 Length=94050 Score = 174 bits (192), Expect = 2e-37 Identities = 194/259 (75%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| |||||||| || ||||| || ||||||||| | ||||| || ||| | | Sbjct 74874 TGAACTTGGTCACGGCCTTCGTGCCCTCCGACACGGCGTGCTTAGCCAGCTCACCGGGGA 74933 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || |||||||| ||||||||||||||| || | ||| |||||| | Sbjct 74934 GCATGAGACGCACGGCAGTCTGGATCTCGCGGCTGGACAGCGTCGACTTCTTGTTGTAAC 74993 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| ||| ||||||||| | | ||||||| |||| |||||||||| |||||||||| Sbjct 74994 GCGACAGCTTGCCGGCCTCCGAGGCGATGCGCTCGAAAATGTCGTTGATGAACGAGTTCA 75053 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||| ||| ||| ||| ||||||||||||||| |||||||||| Sbjct 75054 TGATCGACATGCCGCGCTTGCTGATACCCGTGTCGGGGTGCACCTGACGCAGCACCTTGT 75113 Query 1485710 AAACAAAGGACGAGTACGA 1485728 | | ||| ||||||||| Sbjct 75114 AGATGTAGGTCGAGTACGA 75132 >seq3351 Length=83448 Score = 152 bits (168), Expect = 8e-31 Identities = 189/259 (73%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| || ||||| || || ||||| ||||||||| | ||||| || ||| | | Sbjct 26329 TGAACTTGGTCACAGCCTTCGTGCCTTCTGACACGGCGTGCTTAGCCAGCTCACCGGGGA 26388 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || ||||| || ||||||||||| ||| || | ||| |||||| | Sbjct 26389 GCATGAGACGCACAGCCGTCTGGATCTCACGGCTGGACAGGGTGGACTTCTTGTTGTAAC 26448 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| ||| ||||||||| | ||||||| |||| |||||||||| || ||||||| Sbjct 26449 GCGACAGCTTGCCGGCCTCCGAAGCGATGCGCTCGAAAATGTCGTTGATGAAGGAGTTCA 26508 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||| ||| ||| ||| ||||||||||||||| |||||||||| Sbjct 26509 TGATCGACATTCCACGCTTGCTGATACCCGTGTCGGGGTGCACCTGACGCAGCACCTTGT 26568 Query 1485710 AAACAAAGGACGAGTACGA 1485728 | | ||| ||||||||| Sbjct 26569 AGATGTAGGTCGAGTACGA 26587 >seq4890 Length=10138 Score = 136 bits (150), Expect = 6e-26 Identities = 212/303 (70%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || |||||| |||||||| |||||||||||||| || || | |||||| | || |||||| Sbjct 4295 GCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGGGATAATGCCGTT 4236 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 || |||||| ||||| | |||| | | |||||| | |||||| | Sbjct 4235 AGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTGAT 4176 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 ||||| ||||| ||| || ||||| ||||| | || || || ||||| ||||| Sbjct 4175 ACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTGTCGTAAATGCC 4116 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 ||| || ||||| ||| ||| |||| || || || || || || || || | ||| Sbjct 4115 CTCAATAGAGTCATCCTGCATAGCCAATAGGAAACAAGAAGACAACTGAGGACGTGGCGT 4056 Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTA 2073836 |||||| |||||||| || || || || |||| | ||| || |||||| |||||| Sbjct 4055 GCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTA 3996 Query 2073837 GGT 2073839 || Sbjct 3995 CGT 3993 Score = 102 bits (112), Expect = 1e-15 Identities = 262/403 (65%), Gaps = 4/403 (1%) Strand=Plus/Minus Query 2071612 GTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGC 2071671 || |||| |||||||||||| | |||| | |||||||||| |||||| ||||| Sbjct 4693 GTACCCAAGTTCTGCTGGTTCGACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGC 4634 Query 2071672 GCACCCGTCTCGATCTGCGCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAG 2071731 | |||||||| ||||| || | ||| || |||| | || | ||| | | Sbjct 4633 ACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACCACAGCTGCTGAGCGTTGATTGTC 4574 Query 2071732 GTCCTCGCGCGGCCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGG 2071791 | | ||| || || | | || || ||||| | |||| | Sbjct 4573 TTACGCGCACGTCCTTCCTTCTCGTACTTTTCATACAGAGCTTCAAACTCATCGCCCCAG 4514 Query 2071792 CACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACC 2071851 ||||||| ||| || || || ||| || || || | ||| | ||| | | || Sbjct 4513 CACTCGTACAGACCAGGAGCTTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCC 4454 Query 2071852 ACGCGGCGCATAAACAGGTC--GCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGT 2071909 || | ||| || || || |||| |||||| ||||||| | ||||| || |||| Sbjct 4453 ACTCTCTTCATGAAGAGATCAGGCAC--CCACAGCGCGTAAAACAAGTCGCGGGCGCGGT 4396 Query 2071910 TCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACG 2071969 | ||| || ||||||||||| ||| || || | |||| | |||||||||||||| Sbjct 4395 GCAGCTCATTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACG 4336 Query 2071970 GCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 |||||| |||| || || | |||||||||||| || ||||| Sbjct 4335 GCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCTCCGCC 4293 >seq4898 Length=18774 Score = 132 bits (146), Expect = 8e-25 Identities = 259/376 (69%), Gaps = 10/376 (3%) Strand=Plus/Minus Query 2019006 GGCAACATGCCCAACCTCTTGCTGGCGGGCCCGCCCGGCACGGGCAAGACCACGAGCATC 2019065 || |||||| | || ||| | || | ||||| || || || || || || |||||||| Sbjct 15127 GGTAACATGACGAATCTCATCCTCTCCGGCCCTCCAGGAACTGGTAAAACAACGAGCATT 15068 Query 2019066 GCGTGCCTGGCGCGCGTGCTCTTGGGCGCGGCCGC-CGACG-AGGCCGTGCTCGAACTCA 2019123 ||| |||||||||| ||| | || || | || ||| | |||| ||||| || |||| Sbjct 15067 TTGTGTCTGGCGCGCGAGCTGCTCGGTGC--CAGCACGAAGCAGGCGGTGCTGGAGCTCA 15010 Query 2019124 ATGCGTCAGACGAGCGCGGCGTGGACGTCGTGCGTAGAATCATCAAGCA--TCACGCTTC 2019181 ||||||| || || ||||| | ||| || || || | |||||| || ||| | Sbjct 15009 ATGCGTCCGATGATCGCGGTATCGACACGGTACGCAGTAAGATCAAGATGTTCGCGCAGC 14950 Query 2019182 GAAAAGAATCGAC-CTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACT 2019240 || | ||| || || || || ||||||||| | |||| | || |||||||||| Sbjct 14949 AGAAGGT---GACACTTCCCCCTGGACGCCACAAGATCGTCATATTGGACGAGGCCGACT 14893 Query 2019241 GCCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGA 2019300 | || | || ||||||||||| || ||| || ||||| | | | | |||| Sbjct 14892 CAATGACAGCTGCAGCCCAGCAGGCTCTACGACGTACTATGGAGATCTTCTCGGCAACGA 14833 Query 2019301 CGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTT 2019360 |||| || || |||||||||||| || | | | |||| || || | ||||| || | Sbjct 14832 CGCGATTCGCATTGGCCTGCAACAACTCCACCAAGATCATTGAGCCCATTCAGAGTCGCT 14773 Query 2019361 GCGCCATCTTGCGCTT 2019376 |||||||| |||| || Sbjct 14772 GCGCCATCCTGCGTTT 14757 >seq6241 Length=23180 Score = 96.9 bits (106), Expect = 5e-14 Identities = 285/437 (65%), Gaps = 2/437 (0%) Strand=Plus/Minus Query 118582 CGCCCAGGAGGACGCGCGTGACCGTGTTTGACCCGTTCTTGCGCACGCCGCGCATGCACA 118641 |||| || | | || |||||| ||| | | ||| |||| ||||||||||||| || Sbjct 14280 CGCCGAGTACGGAGCTCGTGACGGTGCTGGCTCCGCTCTTCTCCACGCCGCGCATGACCA 14221 Query 118642 CGCACATGTGGAGGCCCTCGAGCACGACGCCGACGCCGCGCGCGCCCGTGACCTCGCTGA 118701 |||||||| | |||| | || || | ||||| | | |||| | | | Sbjct 14220 TACACATGTGTGTGGCCTCAATGACCACAGCCACGCCCTTGGGTTCAATGACGCCCATAA 14161 Query 118702 TGCTCTCGGCGATCTGGCGCGTGAGCGCCTCCTGCACCTGGAAGCGGTCCGAGAGCATGT 118761 || | |||||||| || || |||||||||||| | || ||||| | | Sbjct 14160 TGGCATTAGCGATCTGCTTTGTCAGTCGCTCCTGCACCTGCAGACGACGCGAGAAGACCT 14101 Query 118762 CGACGATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGCGGGCAGGTAGCCCACGT 118821 || || |||| | |||||| || || | | |||| ||| | ||| || | || Sbjct 14100 CGCTGACTCGCGCCAGCTTGCTGAGTCCCAATACTTTGCCATTGGGGATGTACCCGATGT 14041 Query 118822 GCGCCTTGCCGATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCAATGTCGC 118881 || | ||||| | || |||| || |||||||||||||||||| | | ||| || || | Sbjct 14040 GCACTTTGCCCGTGAACGGCACCATGTGGTGCTCGCACATGGAGTAGAGGTCGATATCAC 13981 Query 118882 GCACGGTCACCATCTCGCCCGACGT-CTCGGCAAAGAGGGCGTCGCCGACGGCCTCGGCC 118940 |||| | ||||||||| || || ||| | || | || ||| | | |||| Sbjct 13980 GCACAATGACCATCTCG-TCGTGGTCCTCTTCGAACACAGCCTCGTTCAATACGTCGGTT 13922 Query 118941 AGGGTCAGGCGGTGGCCGCGCGTGCGCTCCACCATGGCCTTGGCCACGCGCATGGGCGTG 119000 ||| || ||| || ||| ||| | || | ||||||||||| |||||| ||||| Sbjct 13921 AGGCTCTGGCCGTAGCCCTTGGTGTTGTACAATAAGGCCTTGGCCATGCGCATAGGCGTC 13862 Query 119001 TCCAAGAGGCCCTCGCG 119017 | | ||| || ||||| Sbjct 13861 TTGACGAGCCCTTCGCG 13845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915521670115907